Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_A09
         (945 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    22   9.3  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   9.3  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    22   9.3  

>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.8 bits (44), Expect = 9.3
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +1

Query: 256 VYLTNIQR*TVCSVRSVVLHFVY 324
           V++ NI   + CS+  V+ HF +
Sbjct: 277 VFVNNILAASACSLFVVIFHFAH 299


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.8 bits (44), Expect = 9.3
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = -2

Query: 320 TKCNTTERT 294
           TKCNT ERT
Sbjct: 353 TKCNTLERT 361


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.8 bits (44), Expect = 9.3
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +1

Query: 685 LDTPGHVRMSSYMHQ 729
           LDTPGH    S  H+
Sbjct: 198 LDTPGHAAFISMRHR 212


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,808
Number of Sequences: 438
Number of extensions: 4046
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30960384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)