Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_A08
(884 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g07790.1 68414.m00843 histone H2B, putative strong similarity... 103 2e-22
At3g53650.1 68416.m05926 histone H2B, putative similar to histon... 102 3e-22
At3g09480.1 68416.m01127 histone H2B, putative similar to histon... 101 8e-22
At5g59910.1 68418.m07513 histone H2B nearly identical to histone... 99 2e-21
At2g37470.1 68415.m04596 histone H2B, putative strong similarity... 99 2e-21
At5g22880.1 68418.m02676 histone H2B, putative strong similarity... 99 3e-21
At2g28720.1 68415.m03491 histone H2B, putative strong similarity... 99 4e-21
At5g02570.1 68418.m00191 histone H2B, putative similar to histon... 98 6e-21
At3g46030.1 68416.m04980 histone H2B, putative strong similarity... 97 1e-20
At3g45980.1 68416.m04975 histone H2B identical to histone H2B Ar... 97 1e-20
At1g08170.1 68414.m00902 histone H2B family protein similar to h... 88 6e-18
At5g20970.1 68418.m02493 heat shock family protein contains simi... 30 2.3
At2g18790.1 68415.m02187 phytochrome B (PHYB) Identical to SP|P1... 28 9.5
>At1g07790.1 68414.m00843 histone H2B, putative strong similarity to
histone H2B Arabidopsis thaliana GI:2407802, Gossypium
hirsutum SP|O22582, Lycopersicon esculentum GI:3021489,
Capsicum annuum SP|O49118; contains Pfam profile PF00125
Core histone H2A/H2B/H3/H4
Length = 148
Score = 103 bits (247), Expect = 2e-22
Identities = 55/136 (40%), Positives = 84/136 (61%)
Frame = +1
Query: 43 KILASEKKKNNNNKMAPTKVPKKPLKSMEKVVDXXXXXXXXXXXXXNYQSFSIYLYKLLR 222
K A+E+ N KKP K+ +K+ N +++ IY++K+L+
Sbjct: 12 KKTAAERPVEENKAAEKAPAEKKP-KAGKKLPPKEAGDKKKKRSKKNVETYKIYIFKVLK 70
Query: 223 AVTQDNLGISRKSMLIMNNFVNDMLEKIAVEAGRLVAHGKKNTLGSREIQSAVKLLVPGE 402
V D +GIS K+M IMN+F+ND+ EK+A E+ +L + KK T+ SREIQ+AV+L++PGE
Sbjct: 71 QVHPD-IGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLPGE 129
Query: 403 LATHANSEGMKAISMY 450
LA HA SEG KA++ +
Sbjct: 130 LAKHAVSEGTKAVTKF 145
>At3g53650.1 68416.m05926 histone H2B, putative similar to histone
H2B from Lycopersicon esculentum, PIR:T06389 GI:3021483,
Gossypium hirsutum SP|O22582, Capsicum annuum SP|O49118;
contains Pfam profile PF00125 Core histone H2A/H2B/H3/H4
Length = 138
Score = 102 bits (245), Expect = 3e-22
Identities = 54/133 (40%), Positives = 82/133 (61%)
Frame = +1
Query: 52 ASEKKKNNNNKMAPTKVPKKPLKSMEKVVDXXXXXXXXXXXXXNYQSFSIYLYKLLRAVT 231
A+EKK K P K+ +K+ N +++ IY++K+L+ V
Sbjct: 5 AAEKKPAGKKPAEKAPAEKLP-KAEKKITKEGGSEKKKKKSKKNIETYKIYIFKVLKQVH 63
Query: 232 QDNLGISRKSMLIMNNFVNDMLEKIAVEAGRLVAHGKKNTLGSREIQSAVKLLVPGELAT 411
D +GIS K+M IMN+F+ND+ EK+A E+ RL + KK T+ SREIQ+AV+L++PGEL+
Sbjct: 64 PD-IGISGKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELSK 122
Query: 412 HANSEGMKAISMY 450
HA SEG KA++ +
Sbjct: 123 HAVSEGTKAVTKF 135
>At3g09480.1 68416.m01127 histone H2B, putative similar to histone
from Arabidopsis thaliana GI:2407802, Gossypium hirsutum
SP|O22582, H2B-3 GB:CAA12231 from [Lycopersicon
esculentum]; contains Pfam profile PF00125 Core histone
H2A/H2B/H3/H4
Length = 126
Score = 101 bits (241), Expect = 8e-22
Identities = 54/124 (43%), Positives = 79/124 (63%), Gaps = 2/124 (1%)
Frame = +1
Query: 85 MAPT--KVPKKPLKSMEKVVDXXXXXXXXXXXXXNYQSFSIYLYKLLRAVTQDNLGISRK 258
MAP K P + +K + + +++ IYL+K+L+ V D +GIS K
Sbjct: 1 MAPKAEKKPSEKAPKADKKITKEGGSERKKKTKKSTETYKIYLFKVLKQVHPD-IGISGK 59
Query: 259 SMLIMNNFVNDMLEKIAVEAGRLVAHGKKNTLGSREIQSAVKLLVPGELATHANSEGMKA 438
+M IMN+F+ND EKIA+E+ RL + KK T+ SREIQ+AV+L++PGELA HA SEG KA
Sbjct: 60 AMGIMNSFINDTFEKIALESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKA 119
Query: 439 ISMY 450
++ +
Sbjct: 120 VTKF 123
>At5g59910.1 68418.m07513 histone H2B nearly identical to histone
H2B Arabidopsis thaliana GI:2407802; contains Pfam
profile PF00125 Core histone H2A/H2B/H3/H4
Length = 150
Score = 99 bits (238), Expect = 2e-21
Identities = 56/135 (41%), Positives = 82/135 (60%), Gaps = 2/135 (1%)
Frame = +1
Query: 52 ASEKKKNNNNKMAPTKVPKKPL--KSMEKVVDXXXXXXXXXXXXXNYQSFSIYLYKLLRA 225
ASEK +K KKP K + K + +++ IY++K+L+
Sbjct: 15 ASEKPVEEKSKAEKAPAEKKPKAGKKLPKEAGAGGDKKKKMKKK-SVETYKIYIFKVLKQ 73
Query: 226 VTQDNLGISRKSMLIMNNFVNDMLEKIAVEAGRLVAHGKKNTLGSREIQSAVKLLVPGEL 405
V D +GIS K+M IMN+F+ND+ EK+A EA +L + KK T+ SREIQ+AV+L++PGEL
Sbjct: 74 VHPD-IGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREIQTAVRLVLPGEL 132
Query: 406 ATHANSEGMKAISMY 450
A HA SEG KA++ +
Sbjct: 133 AKHAVSEGTKAVTKF 147
>At2g37470.1 68415.m04596 histone H2B, putative strong similarity to
histone H2B from Lycopersicon esculentum GI:3021483,
GI:3021485, Capsicum annuum SP|O49118; contains Pfam
profile PF00125 Core histone H2A/H2B/H3/H4
Length = 138
Score = 99 bits (238), Expect = 2e-21
Identities = 56/135 (41%), Positives = 84/135 (62%), Gaps = 2/135 (1%)
Frame = +1
Query: 52 ASEKKKNNNNKMAPTKVPKKPLKSMEKVV--DXXXXXXXXXXXXXNYQSFSIYLYKLLRA 225
A+EKK K K P + L EK + D + +++ IY++K+L+
Sbjct: 5 AAEKKPAE--KKPAGKAPAEKLPKAEKKISKDAGGSEKKKKKSKKSVETYKIYIFKVLKQ 62
Query: 226 VTQDNLGISRKSMLIMNNFVNDMLEKIAVEAGRLVAHGKKNTLGSREIQSAVKLLVPGEL 405
V D +GIS K+M IMN+F+ND+ EK+A E+ +L + KK T+ SREIQ+AV+L++PGEL
Sbjct: 63 VHPD-VGISGKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLPGEL 121
Query: 406 ATHANSEGMKAISMY 450
A HA SEG KA++ +
Sbjct: 122 AKHAVSEGTKAVTKF 136
>At5g22880.1 68418.m02676 histone H2B, putative strong similarity to
histone H2B-3 Lycopersicon esculentum GI:3021485, H2B
Gossypium hirsutum SP|O22582; contains Pfam profile
PF00125 Core histone H2A/H2B/H3/H4
Length = 145
Score = 99.1 bits (236), Expect = 3e-21
Identities = 46/90 (51%), Positives = 70/90 (77%)
Frame = +1
Query: 181 NYQSFSIYLYKLLRAVTQDNLGISRKSMLIMNNFVNDMLEKIAVEAGRLVAHGKKNTLGS 360
N +++ IY++K+L+ V D +GIS K+M IMN+F+ND+ EK+A E+ +L + KK T+ S
Sbjct: 54 NVETYKIYIFKVLKQVHPD-IGISSKAMGIMNSFINDIFEKLAGESSKLARYNKKPTITS 112
Query: 361 REIQSAVKLLVPGELATHANSEGMKAISMY 450
REIQ+AV+L++PGELA HA SEG KA++ +
Sbjct: 113 REIQTAVRLVLPGELAKHAVSEGTKAVTKF 142
>At2g28720.1 68415.m03491 histone H2B, putative strong similarity to
histone H2B Arabidopsis thaliana GI:2407802, Gossypium
hirsutum SP|O22582; contains Pfam profile PF00125 Core
histone H2A/H2B/H3/H4
Length = 151
Score = 98.7 bits (235), Expect = 4e-21
Identities = 46/88 (52%), Positives = 69/88 (78%)
Frame = +1
Query: 187 QSFSIYLYKLLRAVTQDNLGISRKSMLIMNNFVNDMLEKIAVEAGRLVAHGKKNTLGSRE 366
+++ IY++K+L+ V D +GIS K+M IMN+F+ND+ EK+A EA +L + KK T+ SRE
Sbjct: 62 ETYKIYIFKVLKQVHPD-IGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSRE 120
Query: 367 IQSAVKLLVPGELATHANSEGMKAISMY 450
IQ+AV+L++PGELA HA SEG KA++ +
Sbjct: 121 IQTAVRLVLPGELAKHAVSEGTKAVTKF 148
>At5g02570.1 68418.m00191 histone H2B, putative similar to histone
H2B-2 Lycopersicon esculentum GI:3021483, Gossypium
hirsutum SP|O22582, Asparagus officinalis GI:563329;
contains Pfam profile PF00125 Core histone H2A/H2B/H3/H4
Length = 132
Score = 98.3 bits (234), Expect = 6e-21
Identities = 46/88 (52%), Positives = 69/88 (78%)
Frame = +1
Query: 187 QSFSIYLYKLLRAVTQDNLGISRKSMLIMNNFVNDMLEKIAVEAGRLVAHGKKNTLGSRE 366
+++ IY++K+L+ V D +GIS K+M IMN+F+ND+ EK+A E+ RL + KK T+ SRE
Sbjct: 43 ETYKIYIFKVLKQVHPD-IGISGKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSRE 101
Query: 367 IQSAVKLLVPGELATHANSEGMKAISMY 450
IQ+AV+L++PGELA HA SEG KA++ +
Sbjct: 102 IQTAVRLVLPGELAKHAVSEGTKAVTKF 129
>At3g46030.1 68416.m04980 histone H2B, putative strong similarity to
histone H2B Arabidopsis thaliana GI:2407802, Gossypium
hirsutum SP|O22582, Lycopersicon esculentum GI:3021489;
contains Pfam profile PF00125 Core histone H2A/H2B/H3/H4
Length = 145
Score = 97.5 bits (232), Expect = 1e-20
Identities = 45/88 (51%), Positives = 69/88 (78%)
Frame = +1
Query: 187 QSFSIYLYKLLRAVTQDNLGISRKSMLIMNNFVNDMLEKIAVEAGRLVAHGKKNTLGSRE 366
+++ IY++K+L+ V D +GIS K+M IMN+F+ND+ EK+A E+ +L + KK T+ SRE
Sbjct: 56 ETYKIYIFKVLKQVHPD-IGISSKAMGIMNSFINDIFEKLASESSKLARYNKKPTITSRE 114
Query: 367 IQSAVKLLVPGELATHANSEGMKAISMY 450
IQ+AV+L++PGELA HA SEG KA++ +
Sbjct: 115 IQTAVRLVLPGELAKHAVSEGTKAVTKF 142
>At3g45980.1 68416.m04975 histone H2B identical to histone H2B
Arabidopsis thaliana GI:2407802; contains Pfam profile
PF00125 Core histone H2A/H2B/H3/H4
Length = 150
Score = 97.5 bits (232), Expect = 1e-20
Identities = 45/88 (51%), Positives = 69/88 (78%)
Frame = +1
Query: 187 QSFSIYLYKLLRAVTQDNLGISRKSMLIMNNFVNDMLEKIAVEAGRLVAHGKKNTLGSRE 366
+++ IY++K+L+ V D +GIS K+M IMN+F+ND+ EK+A E+ +L + KK T+ SRE
Sbjct: 61 ETYKIYIFKVLKQVHPD-IGISSKAMGIMNSFINDIFEKLASESSKLARYNKKPTITSRE 119
Query: 367 IQSAVKLLVPGELATHANSEGMKAISMY 450
IQ+AV+L++PGELA HA SEG KA++ +
Sbjct: 120 IQTAVRLVLPGELAKHAVSEGTKAVTKF 147
>At1g08170.1 68414.m00902 histone H2B family protein similar to
histone H2B from Chlamydomonas reinhardtii [SP|P54347,
SP|P54346, SP|P50565], Volvox carteri [SP|P16867,
SP|P16868]; contains Pfam profile PF00125 Core histone
H2A/H2B/H3/H4
Length = 243
Score = 88.2 bits (209), Expect = 6e-18
Identities = 42/83 (50%), Positives = 63/83 (75%)
Frame = +1
Query: 202 YLYKLLRAVTQDNLGISRKSMLIMNNFVNDMLEKIAVEAGRLVAHGKKNTLGSREIQSAV 381
Y+YK+++ V D LGI+ K+M ++N F+ DM E+IA EA RL + K+ TL SREI++AV
Sbjct: 154 YVYKVMKQVHPD-LGITSKAMTVVNMFMGDMFERIAQEAARLSDYTKRRTLSSREIEAAV 212
Query: 382 KLLVPGELATHANSEGMKAISMY 450
+L++PGEL+ HA +EG KA+S +
Sbjct: 213 RLVLPGELSRHAVAEGSKAVSNF 235
>At5g20970.1 68418.m02493 heat shock family protein contains
similarity to Swiss-Prot:P27397 18.0 kDa class I heat
shock protein [Daucus carota]
Length = 249
Score = 29.9 bits (64), Expect = 2.3
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = -3
Query: 339 AVGDQPSGFHGDLLQHIVNEVIHDQHRLPRDAQVVLRD 226
A+ ++PSG D L+H ++ HD +L DAQ R+
Sbjct: 128 AMVEKPSGGKTDQLKHDAQQLKHDAQQLKHDAQQKARE 165
>At2g18790.1 68415.m02187 phytochrome B (PHYB) Identical to
SP|P14713 Phytochrome B {Arabidopsis thaliana}
Length = 1172
Score = 27.9 bits (59), Expect = 9.5
Identities = 14/52 (26%), Positives = 26/52 (50%)
Frame = +1
Query: 292 MLEKIAVEAGRLVAHGKKNTLGSREIQSAVKLLVPGELATHANSEGMKAISM 447
+++ + + + HGK LG + +K +V LA HA+S G+ S+
Sbjct: 470 IMDLVKCDGAAFLYHGKYYPLGVAPSEVQIKDVVEWLLANHADSTGLSTDSL 521
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,471,486
Number of Sequences: 28952
Number of extensions: 218786
Number of successful extensions: 613
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 612
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2071520424
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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