Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_A07
         (836 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF338650-1|AAK07661.1| 2641|Homo sapiens PDZ domain-containing p...    30   9.0  
AB002298-1|BAA20760.2| 2847|Homo sapiens KIAA0300 protein.             30   9.0  

>AF338650-1|AAK07661.1| 2641|Homo sapiens PDZ domain-containing
            protein AIPC protein.
          Length = 2641

 Score = 30.3 bits (65), Expect = 9.0
 Identities = 24/71 (33%), Positives = 31/71 (43%), Gaps = 4/71 (5%)
 Frame = +2

Query: 41   SVKTXDSGSAAGLCQGYPACNAXAPTCGWGRVGPGCDGRDGVQRRRSASGLAA----XTD 208
            S +T DSGS  G  QG+P   A   +       PG  G+    RR  A+G  A     + 
Sbjct: 1245 SSQTGDSGSQEGSAQGHPPAGAGGGSSCRAEPVPG--GQTSSPRRAWAAGAPAYPQWASQ 1302

Query: 209  VTRLDDSRPDK 241
             + LD   PDK
Sbjct: 1303 PSVLDSINPDK 1313


>AB002298-1|BAA20760.2| 2847|Homo sapiens KIAA0300 protein.
          Length = 2847

 Score = 30.3 bits (65), Expect = 9.0
 Identities = 24/71 (33%), Positives = 31/71 (43%), Gaps = 4/71 (5%)
 Frame = +2

Query: 41   SVKTXDSGSAAGLCQGYPACNAXAPTCGWGRVGPGCDGRDGVQRRRSASGLAA----XTD 208
            S +T DSGS  G  QG+P   A   +       PG  G+    RR  A+G  A     + 
Sbjct: 1451 SSQTGDSGSQEGSAQGHPPAGAGGGSSCRAEPVPG--GQTSSPRRAWAAGAPAYPQWASQ 1508

Query: 209  VTRLDDSRPDK 241
             + LD   PDK
Sbjct: 1509 PSVLDSINPDK 1519


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,750,897
Number of Sequences: 237096
Number of extensions: 1764563
Number of successful extensions: 8744
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 8409
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8734
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10538170902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)