Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_A06
(916 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyc... 29 0.70
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom... 28 2.1
SPAC6B12.05c |||chromatin remodeling complex subunit |Schizosacc... 27 2.8
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual 27 3.7
SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces pombe... 27 3.7
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual 27 4.9
SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|ch... 26 6.5
SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit ... 26 6.5
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro... 26 6.5
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch... 26 8.6
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 26 8.6
>SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 835
Score = 29.5 bits (63), Expect = 0.70
Identities = 24/76 (31%), Positives = 31/76 (40%)
Frame = +3
Query: 429 DLMHIPVSTP*VKTKEKFNTKLMKRPFPMRMLNQHPYTILEQLKKQHRVISVCIPVSLNP 608
++ HI TP K E F +K F +ML LE + H + C+ SLN
Sbjct: 338 NIFHIGSKTPGAKLVEAFQKMKLKSVFAEKML-------LELKDELHDAVDTCVQASLNE 390
Query: 609 LYIRVLKSIVLTETCS 656
I K VL E S
Sbjct: 391 FSIEWQK--VLLEAAS 404
>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1125
Score = 27.9 bits (59), Expect = 2.1
Identities = 13/43 (30%), Positives = 26/43 (60%)
Frame = +2
Query: 194 EELPTRALRPRSTLTRKTTNALSSQSVGSGGSAKRKTALNKNQ 322
E L +RAL S L + ++A S+++ G +K +++N+N+
Sbjct: 824 ENLQSRALELESALEQSVSDAKYSKAIMQSGLSKLLSSINENK 866
>SPAC6B12.05c |||chromatin remodeling complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 295
Score = 27.5 bits (58), Expect = 2.8
Identities = 13/57 (22%), Positives = 27/57 (47%)
Frame = +2
Query: 407 DDNDQGWRPDAYSSEHSMSQDQGKIQHQVDEEALSNEDVEPAPVYDFRAIEETAPRD 577
+++D + D E S D+ +++ + +EE ED P PV + + P++
Sbjct: 58 EEDDTNYEEDIIDDEESAQVDEEELEEEEEEE----EDATPEPVVTSKKNSRSKPKN 110
>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 27.1 bits (57), Expect = 3.7
Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Frame = +2
Query: 446 SEHSMSQDQGK---IQHQVDEEALSNEDVEPAPVYDFRAIEETAPRDKCLYSSFFEP 607
S S+ +Q K I ++ E+ N + VYDF+ E P +++++P
Sbjct: 167 SPPSLDVEQNKPFSISNEPVEQETENSSTKDLQVYDFQTASEHLPEQSLQNTTYYDP 223
>SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 480
Score = 27.1 bits (57), Expect = 3.7
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +2
Query: 476 KIQHQVDEEALSNEDVEPAPVYDFRAI 556
K QH +++A N DVE P+ + ++I
Sbjct: 153 KTQHDENDDASDNSDVEEDPILEHKSI 179
>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1828
Score = 26.6 bits (56), Expect = 4.9
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = +2
Query: 614 HQSAEEYCANRDMQRLRRCEVDLFLG 691
H E+Y + D+ L+RC V + +G
Sbjct: 1704 HGGGEQYTTSYDLATLKRCAVTILMG 1729
>SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|chr
2|||Manual
Length = 274
Score = 26.2 bits (55), Expect = 6.5
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +2
Query: 443 SSEHSMSQDQGKIQHQVDEE 502
S EH+ S D G QH +D+E
Sbjct: 46 SKEHNSSPDDGPWQHDLDQE 65
>SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit
Sfc4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1006
Score = 26.2 bits (55), Expect = 6.5
Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
Frame = -3
Query: 446 WNMHQVAILGHYHLELKEYHLEWFSLIIDNRPHQN-EHWF*GSDSYLRLSFFLHCHHSQQ 270
W M + +E + LE+F LI ++ P QN W+ YL L + H +
Sbjct: 431 WGMLYDIAKAYMDIERLDLALEYFVLICNHEPAQNIGLWYNMGVCYLELKEYEHAQQCME 490
>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1385
Score = 26.2 bits (55), Expect = 6.5
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +2
Query: 404 QDDNDQGWRPDAYSSEHSMSQDQGKIQHQVDEEALSNED 520
QD+ + YSSE S S+D+ K + +SN+D
Sbjct: 617 QDEPSYKFHKYEYSSEESGSEDEFKSEKDTKGYVISNDD 655
>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1294
Score = 25.8 bits (54), Expect = 8.6
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = -1
Query: 598 ETGIQTLITRCCFFNCSKIVY-GCWFNILIGKGLFINLVLNFSLVLTHGV 452
E+ I TLIT CC I++ +F+I + L ++NF L L H V
Sbjct: 794 ESCIDTLITNCCAMQSFSIMHLPKFFSITMSSNLSERSLVNF-LRLLHVV 842
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 25.8 bits (54), Expect = 8.6
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = +2
Query: 227 STLTRKTTNALSSQSVGSGGSAKRKTALNKNQIPKT 334
STL +++ S S+G G S + + N++P T
Sbjct: 3649 STLDYSVSSSSLSSSIGVGSSFSSNSKVTSNKVPST 3684
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,125,495
Number of Sequences: 5004
Number of extensions: 61082
Number of successful extensions: 190
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 464508080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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