Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_A06
(916 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0253 - 16196275-16196307,16196425-16196550,16196643-161967... 31 1.7
02_05_0319 - 27872601-27874457 30 2.2
04_03_0582 + 17528335-17529790,17529913-17531651,17531814-175320... 29 3.9
01_06_0093 + 26385471-26385740,26385842-26385934,26386526-263865... 29 5.2
05_03_0459 - 14284513-14286336 29 6.8
02_02_0280 - 8515894-8517309 29 6.8
08_01_1011 + 10226160-10226676,10226794-10226810,10227677-102278... 28 9.0
06_03_0118 + 16836401-16837456,16837558-16837701,16837812-16838231 28 9.0
03_03_0111 + 14527548-14528543,14529158-14529337,14529428-14529805 28 9.0
>10_08_0253 - 16196275-16196307,16196425-16196550,16196643-16196741,
16196822-16197001,16197090-16197371,16197471-16199141,
16199257-16199463,16199566-16199700,16199792-16200082,
16200403-16200621,16200876-16201034,16201120-16201181,
16201257-16201383,16201460-16201693,16201777-16202003,
16202163-16202257,16202341-16202468,16202574-16202594,
16202765-16202921,16203007-16203075,16203228-16203341,
16203415-16203491,16203576-16203688,16204432-16204507,
16204592-16204756,16204825-16204952,16205049-16205130,
16205426-16205548,16205633-16205860,16205933-16206034,
16206144-16206341,16206581-16206760,16206868-16207020,
16207690-16207797,16208201-16208355,16208786-16208912,
16209825-16209914,16209986-16210127,16210303-16210379,
16210467-16210582,16210638-16210773,16211130-16211198,
16211279-16211361,16211655-16211720,16211788-16211974,
16212054-16213547,16213635-16214165,16214234-16214363,
16214407-16215878,16216359-16216364,16216750-16217055,
16217364-16217468,16217577-16217772,16217862-16217929,
16218853-16220631,16221026-16221151,16221604-16221780,
16221997-16222128,16223461-16223498,16223710-16223788,
16224175-16224284,16224787-16224935,16225027-16225197,
16225281-16225552,16226355-16226442,16227942-16228369
Length = 5157
Score = 30.7 bits (66), Expect = 1.7
Identities = 21/76 (27%), Positives = 41/76 (53%), Gaps = 3/76 (3%)
Frame = +2
Query: 455 SMSQDQGKIQHQVDEEALSNEDVEPAPVYDFRAIEETAPRDKCLYSS-FFEPP--LHQSA 625
S+ + +GK++HQ +E A S+ + + YD + ++E ++K + + F PP H+S
Sbjct: 3028 SLLELEGKVRHQCEELAGSSSEEDG---YDQKLLQELKTKEKSIRAKVVFRPPQSRHKSL 3084
Query: 626 EEYCANRDMQRLRRCE 673
C + +RL C+
Sbjct: 3085 IVACCEFE-ERLSECK 3099
>02_05_0319 - 27872601-27874457
Length = 618
Score = 30.3 bits (65), Expect = 2.2
Identities = 22/79 (27%), Positives = 35/79 (44%)
Frame = +2
Query: 164 SSIAAQEKPREELPTRALRPRSTLTRKTTNALSSQSVGSGGSAKRKTALNKNQIPKTNVH 343
+S+ A P LPT A+ + L R TN+ SS + S S+ +A + Q+
Sbjct: 204 NSVTAASSPSLPLPT-AVNSTALLARSPTNSSSSTASSSASSSPPISAASSRQLLSEAAA 262
Query: 344 SGGDGCLLLERTTLSGIPL 400
+ DG + LS + L
Sbjct: 263 AVADGNHTAAASLLSALKL 281
>04_03_0582 +
17528335-17529790,17529913-17531651,17531814-17532035,
17532062-17533525
Length = 1626
Score = 29.5 bits (63), Expect = 3.9
Identities = 28/119 (23%), Positives = 49/119 (41%), Gaps = 6/119 (5%)
Frame = +2
Query: 368 LERTTLSGIPLIQDDNDQGWRPDAYSSEHSMSQDQGK---IQHQVDEEALSNEDVEPAPV 538
L+ G+P D+ GWR + +++ D+ + + QV D P +
Sbjct: 629 LQDLGFKGVPHTYDNRRDGWRNVKVRLDRAVADDKWRDLFPEAQVSHLVSPCSDHSPI-L 687
Query: 539 YDFRAIEETAPRDKCLYSSFF---EPPLHQSAEEYCANRDMQRLRRCEVDLFLGNIRFA 706
+F + T PR KCL+ EP Q EE N + + ++++ LG + A
Sbjct: 688 LEFIVKDTTRPRQKCLHYEIVWEREPESVQVIEEAWINAGV-KTDLGDINIALGRVMSA 745
>01_06_0093 +
26385471-26385740,26385842-26385934,26386526-26386591,
26386872-26387012,26387465-26387692,26387808-26387925,
26387993-26388132,26388259-26388426,26388520-26388675,
26388773-26389138
Length = 581
Score = 29.1 bits (62), Expect = 5.2
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = +2
Query: 545 FRAIEETAPRDKCLYSSFFEPPLHQSAEEYCA 640
F +++ AP ++ L S+FF P+H SA E CA
Sbjct: 526 FVTVDKNAPVNQDLISNFFSDPVH-SAIEVCA 556
>05_03_0459 - 14284513-14286336
Length = 607
Score = 28.7 bits (61), Expect = 6.8
Identities = 23/94 (24%), Positives = 43/94 (45%)
Frame = +2
Query: 221 PRSTLTRKTTNALSSQSVGSGGSAKRKTALNKNQIPKTNVHSGGDGCLLLERTTLSGIPL 400
PRS+ +R +++ SS S GSG S+ + + SG C ++ SG
Sbjct: 266 PRSSSSRSDSSSSSSSSNGSGSSSSSSSGAS----------SGSSSC-AGSSSSSSGSDT 314
Query: 401 IQDDNDQGWRPDAYSSEHSMSQDQGKIQHQVDEE 502
D + RPD + + ++ + ++H+V E+
Sbjct: 315 DADADSASNRPDTTTDHPTEAEVKPMVEHEVMEQ 348
>02_02_0280 - 8515894-8517309
Length = 471
Score = 28.7 bits (61), Expect = 6.8
Identities = 12/44 (27%), Positives = 22/44 (50%)
Frame = +2
Query: 227 STLTRKTTNALSSQSVGSGGSAKRKTALNKNQIPKTNVHSGGDG 358
+ + +KT++ ++ G+G + R KN T + SGG G
Sbjct: 379 AAMAQKTSDTIAQAGHGAGEAKNRAAESGKNSSATTTIGSGGGG 422
>08_01_1011 +
10226160-10226676,10226794-10226810,10227677-10227886,
10227921-10228406
Length = 409
Score = 28.3 bits (60), Expect = 9.0
Identities = 15/49 (30%), Positives = 28/49 (57%)
Frame = +2
Query: 374 RTTLSGIPLIQDDNDQGWRPDAYSSEHSMSQDQGKIQHQVDEEALSNED 520
+T+L I + D D+ D +SE + +D + ++DE++LS+ED
Sbjct: 243 KTSLGQIAYSEWDEDE-IDEDPLNSEDEIDEDPLNSEDEIDEDSLSSED 290
>06_03_0118 + 16836401-16837456,16837558-16837701,16837812-16838231
Length = 539
Score = 28.3 bits (60), Expect = 9.0
Identities = 23/87 (26%), Positives = 39/87 (44%), Gaps = 4/87 (4%)
Frame = +3
Query: 468 TKEKFNTKLMKRPFPMRMLNQH-PYTILEQLKKQHRVISVCIPVSLNPLYIRVLKSIVLT 644
T K N KL++ P+ L +H I+ + + Q + ++ + + +VLT
Sbjct: 409 TTGKLNPKLLQETSPIECLQKHIKKVIMREFRMQRSELDFLKFIAGRGQVLEKVV-VVLT 467
Query: 645 ETCSGLED---AKSTSFSATLGLLNVD 716
TCS D A ++F A+ L N D
Sbjct: 468 HTCSSSADRLRASLSTFMASTRLANED 494
>03_03_0111 + 14527548-14528543,14529158-14529337,14529428-14529805
Length = 517
Score = 28.3 bits (60), Expect = 9.0
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = -2
Query: 702 NLMLPRKRSTSHLLSRCMSLLAQYSSAL*CKGGSKKLEYRHLS 574
N MLP S+ + CM +L + C GG+ +LE LS
Sbjct: 114 NYMLPLNLHNSNSSNGCMQVLGSNKLMITCGGGATRLESMVLS 156
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,808,446
Number of Sequences: 37544
Number of extensions: 421515
Number of successful extensions: 1265
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1262
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2600672280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -