Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_A06
(916 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
D88213-1|BAA19001.1| 729|Homo sapiens retina-specific amine oxi... 35 0.47
DQ060035-1|AAY43129.1| 756|Homo sapiens amine oxidase, copper c... 35 0.47
BC142641-1|AAI42642.1| 756|Homo sapiens amine oxidase, copper c... 35 0.47
AF081363-1|AAD39345.1| 756|Homo sapiens retina copper-containin... 35 0.47
AB012943-2|BAA32590.1| 756|Homo sapiens retina-specific amine o... 35 0.47
AB012943-1|BAA32589.1| 729|Homo sapiens retina-specific amine o... 35 0.47
BC034019-1|AAH34019.1| 373|Homo sapiens LIM domain binding 2 pr... 31 4.4
AK127255-1|BAC86902.1| 1007|Homo sapiens protein ( Homo sapiens ... 31 4.4
AF068651-1|AAC77817.1| 373|Homo sapiens LIM-domain binding fact... 31 4.4
AF064492-1|AAC28342.1| 373|Homo sapiens LIM homeobox protein co... 31 4.4
AF047337-1|AAC83552.1| 373|Homo sapiens LIM homeobox protein co... 31 4.4
AC002398-4|AAB81198.1| 903|Homo sapiens F25965_3 protein. 31 4.4
AF064493-1|AAC28343.1| 331|Homo sapiens LIM homeobox protein co... 31 5.8
AF052389-1|AAC13274.1| 347|Homo sapiens LIM domain binding prot... 31 7.7
>D88213-1|BAA19001.1| 729|Homo sapiens retina-specific amine
oxidase protein.
Length = 729
Score = 34.7 bits (76), Expect = 0.47
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = -3
Query: 500 LHQLGVEFFLGLDSWS-AHWNMHQVAILGHYHLELKEYHLEWFS 372
LH +G+E L + AHW + QV LGHY+ +L + E+ S
Sbjct: 234 LHPVGLELLLDHRALDPAHWTVQQVFYLGHYYADLGQLEREFKS 277
>DQ060035-1|AAY43129.1| 756|Homo sapiens amine oxidase, copper
containing 2 (retina-specific) protein.
Length = 756
Score = 34.7 bits (76), Expect = 0.47
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = -3
Query: 500 LHQLGVEFFLGLDSWS-AHWNMHQVAILGHYHLELKEYHLEWFS 372
LH +G+E L + AHW + QV LGHY+ +L + E+ S
Sbjct: 234 LHPVGLELLLDHRALDPAHWTVQQVFYLGHYYADLGQLEREFKS 277
>BC142641-1|AAI42642.1| 756|Homo sapiens amine oxidase, copper
containing 2 (retina-specific) protein.
Length = 756
Score = 34.7 bits (76), Expect = 0.47
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = -3
Query: 500 LHQLGVEFFLGLDSWS-AHWNMHQVAILGHYHLELKEYHLEWFS 372
LH +G+E L + AHW + QV LGHY+ +L + E+ S
Sbjct: 234 LHPVGLELLLDHRALDPAHWTVQQVFYLGHYYADLGQLEREFKS 277
>AF081363-1|AAD39345.1| 756|Homo sapiens retina copper-containing
monoamine oxidase protein.
Length = 756
Score = 34.7 bits (76), Expect = 0.47
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = -3
Query: 500 LHQLGVEFFLGLDSWS-AHWNMHQVAILGHYHLELKEYHLEWFS 372
LH +G+E L + AHW + QV LGHY+ +L + E+ S
Sbjct: 234 LHPVGLELLLDHRALDPAHWTVQQVFYLGHYYADLGQLEREFKS 277
>AB012943-2|BAA32590.1| 756|Homo sapiens retina-specific amine
oxidase protein.
Length = 756
Score = 34.7 bits (76), Expect = 0.47
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = -3
Query: 500 LHQLGVEFFLGLDSWS-AHWNMHQVAILGHYHLELKEYHLEWFS 372
LH +G+E L + AHW + QV LGHY+ +L + E+ S
Sbjct: 234 LHPVGLELLLDHRALDPAHWTVQQVFYLGHYYADLGQLEREFKS 277
>AB012943-1|BAA32589.1| 729|Homo sapiens retina-specific amine
oxidase protein.
Length = 729
Score = 34.7 bits (76), Expect = 0.47
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = -3
Query: 500 LHQLGVEFFLGLDSWS-AHWNMHQVAILGHYHLELKEYHLEWFS 372
LH +G+E L + AHW + QV LGHY+ +L + E+ S
Sbjct: 234 LHPVGLELLLDHRALDPAHWTVQQVFYLGHYYADLGQLEREFKS 277
>BC034019-1|AAH34019.1| 373|Homo sapiens LIM domain binding 2
protein.
Length = 373
Score = 31.5 bits (68), Expect = 4.4
Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 3/68 (4%)
Frame = +2
Query: 146 CLLLLXSSIAAQEKPREELPTRALRPRSTLTRKTTNALSSQSVGSGGSAKRKTALN---K 316
CL + A PT R R T T+N+ + + S GS K+ TA N
Sbjct: 234 CLFQKWQRMVAPPAEPTRQPTTKRRKRKNSTSSTSNSSAGNNANSTGSKKKTTAANLSLS 293
Query: 317 NQIPKTNV 340
+Q+P V
Sbjct: 294 SQVPDVMV 301
>AK127255-1|BAC86902.1| 1007|Homo sapiens protein ( Homo sapiens
cDNA FLJ45322 fis, clone BRHIP3006294, moderately
similar to Mus musculus Cdc42 GTPase-activating protein
(Cdgap). ).
Length = 1007
Score = 31.5 bits (68), Expect = 4.4
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = +1
Query: 82 LHIADRMSQIAEEQKLEESDGLPPAS 159
L +A+R Q+AE+Q +E G PPAS
Sbjct: 766 LALAERAQQVAEQQSQQECGGTPPAS 791
>AF068651-1|AAC77817.1| 373|Homo sapiens LIM-domain binding factor
CLIM1 protein.
Length = 373
Score = 31.5 bits (68), Expect = 4.4
Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 3/68 (4%)
Frame = +2
Query: 146 CLLLLXSSIAAQEKPREELPTRALRPRSTLTRKTTNALSSQSVGSGGSAKRKTALN---K 316
CL + A PT R R T T+N+ + + S GS K+ TA N
Sbjct: 234 CLFQKWQRMVAPPAEPTRQPTTKRRKRKNSTSSTSNSSAGNNANSTGSKKKTTAANLSLS 293
Query: 317 NQIPKTNV 340
+Q+P V
Sbjct: 294 SQVPDVMV 301
>AF064492-1|AAC28342.1| 373|Homo sapiens LIM homeobox protein
cofactor protein.
Length = 373
Score = 31.5 bits (68), Expect = 4.4
Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 3/68 (4%)
Frame = +2
Query: 146 CLLLLXSSIAAQEKPREELPTRALRPRSTLTRKTTNALSSQSVGSGGSAKRKTALN---K 316
CL + A PT R R T T+N+ + + S GS K+ TA N
Sbjct: 234 CLFQKWQRMVAPPAEPTRQPTTKRRKRKNSTSSTSNSSAGNNANSTGSKKKTTAANLSLS 293
Query: 317 NQIPKTNV 340
+Q+P V
Sbjct: 294 SQVPDVMV 301
>AF047337-1|AAC83552.1| 373|Homo sapiens LIM homeobox protein
cofactor protein.
Length = 373
Score = 31.5 bits (68), Expect = 4.4
Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 3/68 (4%)
Frame = +2
Query: 146 CLLLLXSSIAAQEKPREELPTRALRPRSTLTRKTTNALSSQSVGSGGSAKRKTALN---K 316
CL + A PT R R T T+N+ + + S GS K+ TA N
Sbjct: 234 CLFQKWQRMVAPPAEPTRQPTTKRRKRKNSTSSTSNSSAGNNANSTGSKKKTTAANLSLS 293
Query: 317 NQIPKTNV 340
+Q+P V
Sbjct: 294 SQVPDVMV 301
>AC002398-4|AAB81198.1| 903|Homo sapiens F25965_3 protein.
Length = 903
Score = 31.5 bits (68), Expect = 4.4
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = +1
Query: 82 LHIADRMSQIAEEQKLEESDGLPPAS 159
L +A+R Q+AE+Q +E G PPAS
Sbjct: 518 LALAERAQQVAEQQSQQECGGTPPAS 543
>AF064493-1|AAC28343.1| 331|Homo sapiens LIM homeobox protein
cofactor protein.
Length = 331
Score = 31.1 bits (67), Expect = 5.8
Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
Frame = +2
Query: 146 CLLLLXSSIAAQEKPREELPTRALRPRSTLTRKTTNALSSQSVGSGGSAKRKTALN---K 316
CL + A PT R R T T+N+ + + S GS K+ TA N
Sbjct: 234 CLFQKWQRMVAPPAEPTRQPTTKRRKRKNSTSSTSNSSAGNNANSTGSKKKTTAANLSLS 293
Query: 317 NQIP 328
+Q+P
Sbjct: 294 SQVP 297
>AF052389-1|AAC13274.1| 347|Homo sapiens LIM domain binding protein
protein.
Length = 347
Score = 30.7 bits (66), Expect = 7.7
Identities = 17/56 (30%), Positives = 23/56 (41%)
Frame = +2
Query: 146 CLLLLXSSIAAQEKPREELPTRALRPRSTLTRKTTNALSSQSVGSGGSAKRKTALN 313
CL + A PT R R T T+N+ + + S GS K+ TA N
Sbjct: 210 CLFQKWQRMVAPPAEPTRQPTTKRRKRKNSTSSTSNSSAGNNANSTGSKKKTTAAN 265
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,264,729
Number of Sequences: 237096
Number of extensions: 2233397
Number of successful extensions: 8688
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 8436
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8685
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11881370308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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