Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_A05
         (928 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP19A11.01 |||glycine decarboxylase complex subunit H|Schizosa...   127   3e-30
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    31   0.30 
SPBC17D1.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    30   0.53 
SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase Ran1|Schi...    27   2.8  
SPAPB17E12.11 |||N-oligosaccharyltransferase gamma subunit |Schi...    26   6.6  
SPAC30C2.06c |dml1||mitochondrial genome maintenance protein |Sc...    26   6.6  

>SPBP19A11.01 |||glycine decarboxylase complex subunit
           H|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 169

 Score =  127 bits (306), Expect = 3e-30
 Identities = 58/147 (39%), Positives = 96/147 (65%), Gaps = 8/147 (5%)
 Frame = +2

Query: 284 LQSNIRQTYCM------LCLKYSTGG--SSRKYTDRHEWVTIDKDIGTVGVSEYAQESLG 439
           L S+++  +C+      L +K+S     S++ +T  HEWV +D D+GTVG++ YA  +LG
Sbjct: 15  LTSSVKTGFCLKAAAPTLSMKWSAVKYYSTKHFTKEHEWVKVDGDVGTVGITSYAANALG 74

Query: 440 DVVFAQLPDPGTDLKAGDECGALESVKAASEIYSPLSGTVTEKNKDVEDKPALINTSCYD 619
           +VVF +LP+P T +  GD  GA+ESVK+AS++YSP+SGTVT  N+ + D P  +++S  +
Sbjct: 75  EVVFVELPEPETTVSVGDGIGAVESVKSASDVYSPVSGTVTSINESLGDSPDKVSSSPEE 134

Query: 620 KGWLFRLKIIKQSEINDLMTEEESRNF 700
           +GW+ ++K+    E+  L+ +E    F
Sbjct: 135 EGWICKIKLSSPDELKSLLNDESYAQF 161


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 30.7 bits (66), Expect = 0.30
 Identities = 33/111 (29%), Positives = 50/111 (45%)
 Frame = -2

Query: 702 SKFLDSSSVMRSFISLCLIIFNLNNHPLS*QDVFISAGLSSTSLFFSVTVPDNGE*ISLA 523
           S  + SSS+  +F S+  I+ +  + P S     +S   SSTS  FS     +   IS +
Sbjct: 561 SSGISSSSIPSTFSSVSSILSSSTSSPSS---TSLSISSSSTSSTFSSASTSSPSSIS-S 616

Query: 522 AFTLSKAPHSSPALRSVPGSGSCAKTTSPRDSWAYSLTPTVPISLSIVTHS 370
           + + S    SSP   +     S +   S   S   S   T+PIS S+ T+S
Sbjct: 617 SISSSSTILSSPTPSTSSLMISSSSIISGSSSILSSSISTIPISSSLSTYS 667



 Score = 28.7 bits (61), Expect = 1.2
 Identities = 29/82 (35%), Positives = 43/82 (52%), Gaps = 6/82 (7%)
 Frame = -2

Query: 585 SSTSLFFSV-TVPDNGE*ISLAAFTLSKAPHSSPALRS-----VPGSGSCAKTTSPRDSW 424
           SS+ L  S+ T+P +    SL+ ++ S  P SS  + S     V  S   + ++SP  S 
Sbjct: 646 SSSILSSSISTIPISS---SLSTYSSSVIPSSSTLVSSSSSLIVSSSPVASSSSSPIPS- 701

Query: 423 AYSLTPTVPISLSIVTHSCLSV 358
           + SL  T   SLS +THS LS+
Sbjct: 702 SSSLVSTYSASLSNITHSSLSL 723


>SPBC17D1.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 368

 Score = 29.9 bits (64), Expect = 0.53
 Identities = 19/59 (32%), Positives = 29/59 (49%)
 Frame = -2

Query: 600 ISAGLSSTSLFFSVTVPDNGE*ISLAAFTLSKAPHSSPALRSVPGSGSCAKTTSPRDSW 424
           +S+ L + SL F      N   +S  + +LSK+ +S+ AL S   S  CA T    + W
Sbjct: 310 VSSSLPTLSLDFKQEYSGNNHDMSGLSSSLSKSHNSTSALSSQIWSSPCASTLGGVNVW 368


>SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase
           Ran1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 470

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 11/25 (44%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
 Frame = -2

Query: 429 SWAYSLTPTVPISLSIVT-HSCLSV 358
           +W +  TPT+P+SL ++T +S L V
Sbjct: 360 NWNHCATPTIPVSLQVLTPNSSLKV 384


>SPAPB17E12.11 |||N-oligosaccharyltransferase gamma subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 309

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +2

Query: 203 STKNTDNKMAIQRCLLQIVKTYKLRHHLQSNIRQTY 310
           ST N D    I+     +  +YKL++ L S IR TY
Sbjct: 61  STMNCDVCRLIEPEFKALANSYKLKYGLDSGIRFTY 96


>SPAC30C2.06c |dml1||mitochondrial genome maintenance protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 465

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = +2

Query: 491 DECGALESVKAASEIYSPLSGTVTEKNKDVEDK 589
           +EC +++  +AA +I +P  G  +E  K V+D+
Sbjct: 196 EECDSVQGFQAAIDIDTPWGGFASEYMKVVQDE 228


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,252,075
Number of Sequences: 5004
Number of extensions: 67727
Number of successful extensions: 191
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 469338710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)