Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_A05
(928 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0525 + 3828035-3828116,3829173-3829261,3829446-3829616,382... 126 2e-29
06_03_1060 - 27275799-27275957,27276017-27276187,27276372-272764... 116 3e-26
10_08_0626 + 19375760-19375868,19376229-19376317,19376846-193770... 108 7e-24
02_01_0521 + 3768072-3768239,3768280-3768337,3769197-3769659,376... 103 2e-22
02_01_0522 + 3779404-3779439,3779594-3779709,3780120-3780327,378... 37 0.020
06_03_1200 - 28352647-28352712,28353097-28353216,28353314-283534... 33 0.43
04_04_0410 - 25010455-25011819 30 2.3
02_05_0042 + 25351648-25351724,25351983-25352010,25352311-253523... 30 2.3
05_05_0171 - 22936215-22936590,22937359-22937550,22937591-22938561 29 4.0
01_06_1227 + 35531840-35532516,35532665-35532836,35533158-355333... 29 4.0
02_03_0398 - 18578969-18579140,18579351-18579539,18580032-18581131 29 6.9
05_06_0049 + 25182075-25182332,25182624-25182882,25182986-251832... 28 9.2
05_01_0608 + 5429901-5429982,5430610-5431058,5436758-5437183,543... 28 9.2
>02_01_0525 +
3828035-3828116,3829173-3829261,3829446-3829616,
3829696-3829824
Length = 156
Score = 126 bits (305), Expect = 2e-29
Identities = 55/124 (44%), Positives = 81/124 (65%)
Frame = +2
Query: 329 YSTGGSSRKYTDRHEWVTIDKDIGTVGVSEYAQESLGDVVFAQLPDPGTDLKAGDECGAL 508
+ST KY D HEWV ++ D TVG++++AQ LGDVV+ +LP+ G+ + G GA+
Sbjct: 25 FSTVLKDLKYADTHEWVKVEGDSATVGITDHAQHHLGDVVYVELPEVGSSVSQGKNFGAV 84
Query: 509 ESVKAASEIYSPLSGTVTEKNKDVEDKPALINTSCYDKGWLFRLKIIKQSEINDLMTEEE 688
ESVKA S+IYSP+SG V N + D+P L+NTS Y+ GW+ ++K+ E+N LM + +
Sbjct: 85 ESVKATSDIYSPVSGEVVAVNDGLGDEPGLVNTSPYESGWIIKVKVSDSGELNSLMDDAK 144
Query: 689 SRNF 700
F
Sbjct: 145 YSKF 148
>06_03_1060 -
27275799-27275957,27276017-27276187,27276372-27276460,
27277381-27277474
Length = 170
Score = 116 bits (279), Expect = 3e-26
Identities = 55/134 (41%), Positives = 85/134 (63%), Gaps = 10/134 (7%)
Frame = +2
Query: 329 YSTGGSSRKYTDRHEWVTIDKDIGTVGVSEYAQESLGDVVFAQLPDPGTDLKAGDECGAL 508
+ST KY D HEWV ++ D T+GV+++AQ+ LGDVV+ +LP+ G+ + G GA+
Sbjct: 29 FSTVLKDLKYADTHEWVKVEGDSATIGVTDHAQDHLGDVVYVELPEVGSTVSQGTNFGAV 88
Query: 509 ESVKAASEIYSPLSGTVTEKNKDVEDKPAL----------INTSCYDKGWLFRLKIIKQS 658
ESVKA S+I +P+SG + + N ++ +KP IN S Y+KGW+ ++KI S
Sbjct: 89 ESVKATSDINAPVSGEIIQVNDELSEKPGFLTICFCNFTQINGSPYEKGWIIKVKISDPS 148
Query: 659 EINDLMTEEESRNF 700
E+N LM +E+ + F
Sbjct: 149 ELNSLMDDEKYKKF 162
>10_08_0626 +
19375760-19375868,19376229-19376317,19376846-19377016,
19377347-19377472
Length = 164
Score = 108 bits (259), Expect = 7e-24
Identities = 49/116 (42%), Positives = 74/116 (63%)
Frame = +2
Query: 329 YSTGGSSRKYTDRHEWVTIDKDIGTVGVSEYAQESLGDVVFAQLPDPGTDLKAGDECGAL 508
+ST KY+ HEWV D + T+G++++AQ LG+VVF +LP+ G + G G +
Sbjct: 34 FSTVLDGLKYSSSHEWVKNDGSVATIGITDHAQGHLGEVVFVELPEAGAKVSQGGAFGNV 93
Query: 509 ESVKAASEIYSPLSGTVTEKNKDVEDKPALINTSCYDKGWLFRLKIIKQSEINDLM 676
ESVKA S+I SP+SG V E N + + P LIN+S Y+ GW+ ++K SE++ L+
Sbjct: 94 ESVKATSDINSPISGEVVEVNDKLSETPGLINSSPYEDGWMIKVKPSSPSELDALL 149
>02_01_0521 + 3768072-3768239,3768280-3768337,3769197-3769659,
3769736-3769990,3770763-3770934,3772260-3772910,
3773659-3774045,3774123-3774155,3774239-3774307,
3774388-3774463,3775135-3775223,3775442-3775615,
3775693-3775821
Length = 907
Score = 103 bits (248), Expect = 2e-22
Identities = 46/117 (39%), Positives = 72/117 (61%), Gaps = 1/117 (0%)
Frame = +2
Query: 353 KYTDRHEWVTIDKDIGTVGVSEYAQESLGDVVFAQLPDPGTDLKAGDECGALESVKAASE 532
KY++ HEWV+++ D T+G+S++AQ+ LG V +LP+ G + G++ G + SVK +
Sbjct: 783 KYSETHEWVSVEGDYATIGISDHAQDHLGYVASVELPEVGQSVSQGNKFGVVVSVKGTTR 842
Query: 533 -IYSPLSGTVTEKNKDVEDKPALINTSCYDKGWLFRLKIIKQSEINDLMTEEESRNF 700
I SP+SG V E N + D P L+N Y+ GW+ +KI E+N LM +E+ F
Sbjct: 843 GINSPVSGEVVEVNDQLSDLPGLVNARPYETGWIIVVKISDSGELNSLMNDEDYSKF 899
>02_01_0522 +
3779404-3779439,3779594-3779709,3780120-3780327,
3781446-3781611,3781713-3781842,3782496-3782619,
3782794-3782844,3783140-3783262,3783504-3783602,
3783680-3783790,3783868-3783957,3784035-3784175,
3787913-3788116,3788154-3788290,3788429-3788662,
3789535-3789829,3789963-3790017,3790144-3790245,
3790581-3790669,3790807-3790899
Length = 867
Score = 37.1 bits (82), Expect = 0.020
Identities = 11/25 (44%), Positives = 21/25 (84%)
Frame = +2
Query: 353 KYTDRHEWVTIDKDIGTVGVSEYAQ 427
+Y++ HEWV+++ D T+G+S++AQ
Sbjct: 813 EYSENHEWVSVEGDYATIGISDHAQ 837
>06_03_1200 -
28352647-28352712,28353097-28353216,28353314-28353466,
28354652-28354804,28354890-28354967
Length = 189
Score = 32.7 bits (71), Expect = 0.43
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = -2
Query: 474 VPGSGSCAKTTSPRDSWAYSLTPTVPISLSIVTHSC 367
VPG SC ++ W Y+ PT P S +V C
Sbjct: 43 VPGPDSCTNLPGIKNQWRYTCYPTCPDSGHVVVRKC 78
>04_04_0410 - 25010455-25011819
Length = 454
Score = 30.3 bits (65), Expect = 2.3
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Frame = -2
Query: 546 NGE*ISLAAFTLSKAPHSSPALRSVPGSGSCAKTTSPRDSWAYSLTPTVPISLSIVTHSC 367
+G+ + LAA +AP A+R+ P G C + + L P+SL HS
Sbjct: 117 DGDRLRLAASVPGRAPGDGTAIRAAPDGGCCVAHGGAVHVYNWMLDERRPVSLD---HSQ 173
Query: 366 LS-VYFLDDPPVL 331
++ V +LD+ +L
Sbjct: 174 VNDVAYLDEATLL 186
>02_05_0042 +
25351648-25351724,25351983-25352010,25352311-25352373,
25352880-25352945,25353029-25353076,25353338-25353379,
25353499-25353714,25354066-25354188,25354352-25354564,
25354930-25355016,25355259-25355507,25356386-25356507,
25357135-25357225,25358467-25358882,25359489-25359609
Length = 653
Score = 30.3 bits (65), Expect = 2.3
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -2
Query: 483 LRSVPGSGSCAKTTSPRDSWA 421
LR++PG+ SCA+ SP WA
Sbjct: 359 LRNIPGNDSCAECRSPDPDWA 379
>05_05_0171 - 22936215-22936590,22937359-22937550,22937591-22938561
Length = 512
Score = 29.5 bits (63), Expect = 4.0
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = -2
Query: 555 VPDNGE*ISLAAFTLSKAP-HSSPALRSVPGSGSCAKTTSPRDSW 424
V DN + + F +S +P H SP PG CAK +P +W
Sbjct: 366 VNDNVDPARTSVFFMSVSPLHISPEAWGNPGGVRCAKEDAPVQNW 410
>01_06_1227 +
35531840-35532516,35532665-35532836,35533158-35533357,
35533467-35533622,35536878-35537235,35537407-35537418
Length = 524
Score = 29.5 bits (63), Expect = 4.0
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = -2
Query: 555 VPDNGE*ISLAAFTLSKAP-HSSPALRSVPGSGSCAKTTSPRDSW 424
V DN + + F +S +P H SP + PG CAK T P +W
Sbjct: 380 VNDNIDPARTSVFFMSISPLHISPEVWGNPGGIRCAKETMPLLNW 424
>02_03_0398 - 18578969-18579140,18579351-18579539,18580032-18581131
Length = 486
Score = 28.7 bits (61), Expect = 6.9
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Frame = +2
Query: 332 STGGSSRKYTDRHEWVTIDKDIGTV----GVSEYAQESLGDVVFAQLPD 466
S+ S R+ D+H +V +D D+G V V E+ G +F LP+
Sbjct: 2 SSKRSRRRDDDKHIYVVLDWDMGYVIHKLDVDEFTDSGTGAAMFHHLPE 50
>05_06_0049 +
25182075-25182332,25182624-25182882,25182986-25183204,
25183890-25184032,25184600-25184899
Length = 392
Score = 28.3 bits (60), Expect = 9.2
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = +2
Query: 494 ECGALESVKAASEIYSPLSGTVTEKNKDVEDKPALINTSCYDKGW 628
EC + ES+ A+++ + L+ + K K+V D+P + N KGW
Sbjct: 205 ECISKESLLASAK--NGLAVKILSKGKEVPDEPVVDNKLNRQKGW 247
>05_01_0608 +
5429901-5429982,5430610-5431058,5436758-5437183,
5437270-5437643,5437655-5438113,5438191-5438361,
5438442-5438760
Length = 759
Score = 28.3 bits (60), Expect = 9.2
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +2
Query: 245 LLQIVKTYKLRHHLQSNIR-QTYCMLCLKYSTGGSSRKYTDR 367
LL I + L H+L SNI+ + Y L ++Y+ +S +Y R
Sbjct: 659 LLVITPKWSLVHYLNSNIKPEIYDWLAIEYALNEASDQYVAR 700
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,967,664
Number of Sequences: 37544
Number of extensions: 367683
Number of successful extensions: 871
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 844
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 868
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2647531240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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