Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_A05
(928 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_12241| Best HMM Match : GCV_H (HMM E-Value=0) 134 7e-32
SB_57602| Best HMM Match : GCV_H (HMM E-Value=0) 102 5e-22
SB_54745| Best HMM Match : ChaB (HMM E-Value=5.6) 30 2.3
SB_28727| Best HMM Match : LISCH7 (HMM E-Value=3.6) 30 2.3
SB_54323| Best HMM Match : LISCH7 (HMM E-Value=3.6) 30 2.3
SB_3188| Best HMM Match : Hyd_WA (HMM E-Value=2e-13) 29 4.0
SB_58595| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.3
SB_51590| Best HMM Match : HSP70 (HMM E-Value=4.4e-36) 29 5.3
SB_37321| Best HMM Match : Pkinase (HMM E-Value=2.4e-27) 29 7.1
SB_42482| Best HMM Match : 7tm_1 (HMM E-Value=0) 28 9.3
>SB_12241| Best HMM Match : GCV_H (HMM E-Value=0)
Length = 178
Score = 134 bits (325), Expect = 7e-32
Identities = 57/111 (51%), Positives = 82/111 (73%)
Frame = +2
Query: 353 KYTDRHEWVTIDKDIGTVGVSEYAQESLGDVVFAQLPDPGTDLKAGDECGALESVKAASE 532
KYT +HEWV ++ IGT+GV++YAQ +LGD+V+ QLP+ G +E GALESVKAAS+
Sbjct: 56 KYTPKHEWVVVENGIGTIGVTDYAQSNLGDIVYVQLPEVGDKFSMEEEFGALESVKAASD 115
Query: 533 IYSPLSGTVTEKNKDVEDKPALINTSCYDKGWLFRLKIIKQSEINDLMTEE 685
+YSP SG +TE N +E+ P+LIN S Y GW+ ++++ SE++DL+ EE
Sbjct: 116 LYSPTSGKITEINSQLEEDPSLINKSPYGDGWIVKMELSNPSELDDLLDEE 166
>SB_57602| Best HMM Match : GCV_H (HMM E-Value=0)
Length = 126
Score = 102 bits (244), Expect = 5e-22
Identities = 43/112 (38%), Positives = 71/112 (63%)
Frame = +2
Query: 353 KYTDRHEWVTIDKDIGTVGVSEYAQESLGDVVFAQLPDPGTDLKAGDECGALESVKAASE 532
KYT HEWV+I+ DI TVG++++AQ+ LGD+V+ ++ L + G +E+VK S+
Sbjct: 8 KYTKDHEWVSIEGDIATVGITDFAQKELGDIVYVEVETLDQTLDRDEVFGTVEAVKTVSD 67
Query: 533 IYSPLSGTVTEKNKDVEDKPALINTSCYDKGWLFRLKIIKQSEINDLMTEEE 688
++ PLSG + E N +E P +N+ Y GW+ ++KI S+I L++ E+
Sbjct: 68 LFLPLSGEIIEFNDSLETTPETVNSDPYGDGWMVKIKISDNSQIESLLSSED 119
>SB_54745| Best HMM Match : ChaB (HMM E-Value=5.6)
Length = 420
Score = 30.3 bits (65), Expect = 2.3
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Frame = +2
Query: 371 EWVTIDK-DIGTVGVSEYAQESLGDVVFAQLPDPGTDLK--AGDECGALESVKAASEIYS 541
E V +D+ D+ G++E + D AQLP PGT LK + G V+ S+
Sbjct: 115 EQVYVDEVDVDEEGIAEMLMD---DNSVAQLPRPGTSLKKPGTGQGGPTPGVRPMSQAGR 171
Query: 542 PLSGTV 559
P+SG V
Sbjct: 172 PVSGFV 177
>SB_28727| Best HMM Match : LISCH7 (HMM E-Value=3.6)
Length = 102
Score = 30.3 bits (65), Expect = 2.3
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +2
Query: 245 LLQIVKTYKLRHHLQSNIRQTYCMLCLKYS 334
LL V Y+L + L +IR TYC+ CL S
Sbjct: 28 LLLYVPLYRLLYSLMCDIRVTYCVTCLTSS 57
>SB_54323| Best HMM Match : LISCH7 (HMM E-Value=3.6)
Length = 165
Score = 30.3 bits (65), Expect = 2.3
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +2
Query: 245 LLQIVKTYKLRHHLQSNIRQTYCMLCLKYS 334
LL V Y+L + L +IR TYC+ CL S
Sbjct: 91 LLLYVPLYRLLYSLMCDIRVTYCVTCLTSS 120
>SB_3188| Best HMM Match : Hyd_WA (HMM E-Value=2e-13)
Length = 1389
Score = 29.5 bits (63), Expect = 4.0
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = -2
Query: 462 GSCAKTTSPRDSWAYSLTPTVPISLSIVTHSCLSVYFLDDPPVLYFKH 319
GSC +T S +D + T T PI+ + H+ ++V +D PP L H
Sbjct: 511 GSCNQTVSLQDECS---TTTGPITDMLPGHNSVNVDSIDGPPSLDLSH 555
>SB_58595| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1462
Score = 29.1 bits (62), Expect = 5.3
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Frame = +2
Query: 563 EKNKDVEDKPALINTSCYDKGWLFRLKIIKQSEINDLMTEEESRNF--ENRC 712
+ NK + P I+ S + W+ L+I+ Q +N T+E+ NF ++RC
Sbjct: 1069 QNNKVANENP--ISFSSAETQWMHLLRILGQLVVNKEYTDEQINNFNWDDRC 1118
>SB_51590| Best HMM Match : HSP70 (HMM E-Value=4.4e-36)
Length = 437
Score = 29.1 bits (62), Expect = 5.3
Identities = 24/88 (27%), Positives = 40/88 (45%)
Frame = +2
Query: 437 GDVVFAQLPDPGTDLKAGDECGALESVKAASEIYSPLSGTVTEKNKDVEDKPALINTSCY 616
G + ++LP P + G + G S A Y +SG + + + +DK +
Sbjct: 19 GYIAQSRLPPPKPKI-IGIDLGTTYSCVGA---YQAISGRIDIFSDENDDKVVPSLVAFT 74
Query: 617 DKGWLFRLKIIKQSEINDLMTEEESRNF 700
DKG L K + Q+EIN T +++ F
Sbjct: 75 DKGVLVGEKALSQAEINPKNTIYDAKRF 102
>SB_37321| Best HMM Match : Pkinase (HMM E-Value=2.4e-27)
Length = 592
Score = 28.7 bits (61), Expect = 7.1
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = -3
Query: 353 SLMIHLCCTSSITYSMFV*CLTVNDASICKFSLFVINISVLPFCCQYF 210
S+++ C S + F CL+VND+ + F++ V I+ L F C F
Sbjct: 473 SILVFTCIDSRVYVHRFS-CLSVNDSRVYVFTILV--ITCLRFSCLRF 517
>SB_42482| Best HMM Match : 7tm_1 (HMM E-Value=0)
Length = 347
Score = 28.3 bits (60), Expect = 9.3
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = -1
Query: 484 FKVCSGVWQLCKNNITERFLGIFANPNCTYIFV-YCNPFMSISI 356
F CS +W L + + F+G+F N IFV Y + ++ I
Sbjct: 167 FSTCSLIWDLNRISFVIVFIGVFVNSVTITIFVCYYKIYKTVKI 210
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,116,979
Number of Sequences: 59808
Number of extensions: 463976
Number of successful extensions: 1148
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1035
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1140
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2693287426
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -