Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_A03
(877 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_10931| Best HMM Match : No HMM Matches (HMM E-Value=.) 50 2e-06
SB_55640| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.008
SB_39285| Best HMM Match : Proteasome (HMM E-Value=0) 36 0.033
SB_48652| Best HMM Match : RVT_1 (HMM E-Value=0.0009) 36 0.043
SB_50062| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.30
SB_22053| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_29730| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_50916| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_42160| Best HMM Match : RVT_1 (HMM E-Value=0) 29 6.5
SB_25693| Best HMM Match : Exo_endo_phos (HMM E-Value=0.012) 29 6.5
SB_56011| Best HMM Match : Exo_endo_phos (HMM E-Value=0.13) 28 8.6
SB_55435| Best HMM Match : RVT_1 (HMM E-Value=7.9e-22) 28 8.6
SB_46984| Best HMM Match : Exo_endo_phos (HMM E-Value=4.2e-09) 28 8.6
SB_46241| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.6
SB_43221| Best HMM Match : PHF5 (HMM E-Value=2) 28 8.6
SB_41253| Best HMM Match : Exo_endo_phos (HMM E-Value=4.5e-09) 28 8.6
SB_29894| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.6
SB_15701| Best HMM Match : MT-A70 (HMM E-Value=1.6e-17) 28 8.6
SB_40728| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.6
SB_24634| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00054) 28 8.6
SB_9246| Best HMM Match : RHS_repeat (HMM E-Value=5.5e-06) 28 8.6
>SB_10931| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 467
Score = 50.4 bits (115), Expect = 2e-06
Identities = 30/102 (29%), Positives = 53/102 (51%), Gaps = 2/102 (1%)
Frame = +2
Query: 275 GTTIVGIIYADGVILGADTRATENTVVSDKNCQKIHYLASNMYCCG--AGTAADTEMTTQ 448
GTT + + GVI+ D+RAT + ++ + +K+ + N Y G AG AAD +
Sbjct: 28 GTTTLAFKFKHGVIVAVDSRATAGSYIASQTVKKV--IEINPYLLGTMAGGAADCSFWER 85
Query: 449 SVASQLELQRLHTGRTVPVETAATLLKRMLFRYQGHIGAALV 574
+A Q + L + V A+ +L M++ Y+G +G ++V
Sbjct: 86 LLAKQCRIYELRNKERISVAAASKILANMVYYYKG-MGLSMV 126
Score = 38.3 bits (85), Expect = 0.008
Identities = 23/69 (33%), Positives = 36/69 (52%)
Frame = +2
Query: 533 MLFRYQGHIGAALVLGGVDRTGPHIYCIYPHGSVDKLPYATMGSGSLAAMAVFEAGWKRD 712
M F +QG ++ G D+ GP +Y + G+ ++GSGS A V ++G+K D
Sbjct: 146 MFFTFQG-----TMICGWDKKGPGLYYVDSDGTRLSNQMFSVGSGSTYAYGVMDSGYKYD 200
Query: 713 MNEEEGKKL 739
M+ EE L
Sbjct: 201 MSPEEAYDL 209
>SB_55640| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1071
Score = 38.3 bits (85), Expect = 0.008
Identities = 17/20 (85%), Positives = 18/20 (90%)
Frame = +2
Query: 722 EEGKKLVRDAIAAGIFNDLG 781
EE K+LVRD IAAGIFNDLG
Sbjct: 2 EEAKQLVRDGIAAGIFNDLG 21
>SB_39285| Best HMM Match : Proteasome (HMM E-Value=0)
Length = 215
Score = 36.3 bits (80), Expect = 0.033
Identities = 36/155 (23%), Positives = 63/155 (40%), Gaps = 6/155 (3%)
Frame = +2
Query: 254 APKATKTGTTIVGIIYADGVILGADTRATENTVVSDKNCQKIHYLASNMYCCGAGTAADT 433
A +A K G+T VG+ + V+LG + +A + + +KI L ++ AG AD
Sbjct: 24 AQEAVKKGSTAVGVRGNNIVVLGVERKAVAK-LQEPRTVRKICTLDDHVLMAFAGLTADA 82
Query: 434 EMTTQSVASQLELQRLHTGRTVPVETAATLLKRMLFRY-----QGHIGAALVLGGVDRTG 598
+ + + +L V +E + + RY + G + ++ G D G
Sbjct: 83 RILVNKARVECQSHKLTVEDPVTLEYITRFIATLKQRYTQSNGRRPFGISTLIVGFDFDG 142
Query: 599 -PHIYCIYPHGSVDKLPYATMGSGSLAAMAVFEAG 700
P +Y P G+ G G +AV + G
Sbjct: 143 TPRLYQTDPSGTYHAWKVVQSG-GKNIELAVMKKG 176
>SB_48652| Best HMM Match : RVT_1 (HMM E-Value=0.0009)
Length = 938
Score = 35.9 bits (79), Expect = 0.043
Identities = 17/55 (30%), Positives = 30/55 (54%)
Frame = +2
Query: 266 TKTGTTIVGIIYADGVILGADTRATENTVVSDKNCQKIHYLASNMYCCGAGTAAD 430
T TGT+++GI + GV++ ADT + ++ +N ++ + N AG AD
Sbjct: 872 TTTGTSVLGIKFNGGVLMAADTLGSYGSLARYRNISRLMRVNENTIIGAAGDYAD 926
>SB_50062| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 299
Score = 33.1 bits (72), Expect = 0.30
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = +2
Query: 233 LAQKGFPAPKATKTGTTIVGIIYADGVILGADTRATENTVVSDKNCQ 373
L + G P P + G VG I A G +L + TRA V++ NC+
Sbjct: 84 LKRLGIPPPLLSMGGAEFVGAIRARGGLLFSKTRAARGRQVANVNCE 130
>SB_22053| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1670
Score = 30.3 bits (65), Expect = 2.1
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = +2
Query: 428 DTEMTTQSVASQLELQRLHT--GRTVPVETAATLLKRMLFRYQGH 556
D + V S E+ RLHT GR+ PVE LLK+ L + + H
Sbjct: 250 DKKDEDSKVMSSQEVSRLHTPQGRSTPVEPHLQLLKQALKQVKPH 294
>SB_29730| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4275
Score = 29.5 bits (63), Expect = 3.7
Identities = 21/67 (31%), Positives = 32/67 (47%)
Frame = +2
Query: 95 RGITFKGVRFKLKFQ*NLSNHEMASALVPEIPVPGFSFENFQRNAFLAQKGFPAPKATKT 274
+G+ KG L++ SN E + L +P+ +FE FQRN F QK P
Sbjct: 729 KGLKRKGSIVLLRYILQDSNFEDLAGLAL-LPLANNTFEVFQRNGFGFQKKVYMPSDQHP 787
Query: 275 GTTIVGI 295
G+ + G+
Sbjct: 788 GSLLRGL 794
>SB_50916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1681
Score = 29.1 bits (62), Expect = 4.9
Identities = 13/24 (54%), Positives = 18/24 (75%)
Frame = +2
Query: 407 CGAGTAADTEMTTQSVASQLELQR 478
C GTAA T +T QSVAS ++++R
Sbjct: 637 CKRGTAALTNVTKQSVASVVDIER 660
>SB_42160| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 1858
Score = 28.7 bits (61), Expect = 6.5
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = -1
Query: 781 TQVIEYT-SSNSISDKLFSFFLIHITFPTCFKHCH 680
T +++Y SSN + K F F IH P HCH
Sbjct: 1016 TSLVDYVISSNRVQQK-FQFLKIHPLLPHISDHCH 1049
>SB_25693| Best HMM Match : Exo_endo_phos (HMM E-Value=0.012)
Length = 826
Score = 28.7 bits (61), Expect = 6.5
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = -1
Query: 781 TQVIEYT-SSNSISDKLFSFFLIHITFPTCFKHCH 680
T +++Y SSN + K F F IH P HCH
Sbjct: 591 TSLVDYVISSNRVQQK-FQFLKIHPLLPHISDHCH 624
>SB_56011| Best HMM Match : Exo_endo_phos (HMM E-Value=0.13)
Length = 307
Score = 28.3 bits (60), Expect = 8.6
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = -1
Query: 781 TQVIEYT-SSNSISDKLFSFFLIHITFPTCFKHCH 680
T +++Y SSN + K F F IH P HCH
Sbjct: 195 TSLVDYVISSNRVRQK-FQFLKIHPLLPHISDHCH 228
>SB_55435| Best HMM Match : RVT_1 (HMM E-Value=7.9e-22)
Length = 726
Score = 28.3 bits (60), Expect = 8.6
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = -1
Query: 781 TQVIEYT-SSNSISDKLFSFFLIHITFPTCFKHCH 680
T +++Y SSN + K F F IH P HCH
Sbjct: 265 TSLVDYAISSNRVRQK-FQFLKIHPLLPHISDHCH 298
>SB_46984| Best HMM Match : Exo_endo_phos (HMM E-Value=4.2e-09)
Length = 476
Score = 28.3 bits (60), Expect = 8.6
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = -1
Query: 781 TQVIEYT-SSNSISDKLFSFFLIHITFPTCFKHCH 680
T +++Y SSN + K F F IH P HCH
Sbjct: 246 TSLVDYVISSNRVRQK-FQFLKIHPLLPHISDHCH 279
>SB_46241| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 625
Score = 28.3 bits (60), Expect = 8.6
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = -1
Query: 781 TQVIEYT-SSNSISDKLFSFFLIHITFPTCFKHCH 680
T +++Y SSN + K F F IH P HCH
Sbjct: 451 TSLVDYVISSNRVRQK-FQFLKIHPLLPHISDHCH 484
>SB_43221| Best HMM Match : PHF5 (HMM E-Value=2)
Length = 361
Score = 28.3 bits (60), Expect = 8.6
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = -1
Query: 781 TQVIEYT-SSNSISDKLFSFFLIHITFPTCFKHCH 680
T +++Y SSN + K F F IH P HCH
Sbjct: 102 TSLVDYVISSNRVRQK-FQFLKIHPLLPHISDHCH 135
>SB_41253| Best HMM Match : Exo_endo_phos (HMM E-Value=4.5e-09)
Length = 404
Score = 28.3 bits (60), Expect = 8.6
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = -1
Query: 781 TQVIEYT-SSNSISDKLFSFFLIHITFPTCFKHCH 680
T +++Y SSN + K F F IH P HCH
Sbjct: 246 TSLVDYVISSNRVRQK-FQFLKIHPLLPHISDHCH 279
>SB_29894| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 838
Score = 28.3 bits (60), Expect = 8.6
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = -1
Query: 781 TQVIEYT-SSNSISDKLFSFFLIHITFPTCFKHCH 680
T +++Y SSN + K F F IH P HCH
Sbjct: 246 TSLVDYVISSNRVRQK-FQFLKIHPLLPHISDHCH 279
>SB_15701| Best HMM Match : MT-A70 (HMM E-Value=1.6e-17)
Length = 1178
Score = 28.3 bits (60), Expect = 8.6
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = -1
Query: 781 TQVIEYT-SSNSISDKLFSFFLIHITFPTCFKHCH 680
T +++Y SSN + K F F IH P HCH
Sbjct: 960 TSLVDYVISSNRVRQK-FQFLKIHPLLPHISDHCH 993
>SB_40728| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1317
Score = 28.3 bits (60), Expect = 8.6
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = -1
Query: 781 TQVIEYT-SSNSISDKLFSFFLIHITFPTCFKHCH 680
T +++Y SSN + K F F IH P HCH
Sbjct: 719 TSLVDYVISSNRVRQK-FQFLKIHPLLPHISDHCH 752
>SB_24634| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00054)
Length = 1012
Score = 28.3 bits (60), Expect = 8.6
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = -1
Query: 781 TQVIEYT-SSNSISDKLFSFFLIHITFPTCFKHCH 680
T +++Y SSN + K F F IH P HCH
Sbjct: 837 TSLVDYVISSNRVRQK-FQFLKIHPLLPHISDHCH 870
>SB_9246| Best HMM Match : RHS_repeat (HMM E-Value=5.5e-06)
Length = 530
Score = 28.3 bits (60), Expect = 8.6
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = -1
Query: 781 TQVIEYT-SSNSISDKLFSFFLIHITFPTCFKHCH 680
T +++Y SSN + K F F IH P HCH
Sbjct: 372 TSLVDYVISSNRVRQK-FQFLKIHPLLPHISDHCH 405
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,738,271
Number of Sequences: 59808
Number of extensions: 498372
Number of successful extensions: 1384
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1279
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1384
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2490695009
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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