Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_A03
(877 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g40580.2 68418.m04925 20S proteasome beta subunit B (PBB2) (P... 282 2e-76
At5g40580.1 68418.m04924 20S proteasome beta subunit B (PBB2) (P... 282 2e-76
At3g27430.2 68416.m03429 20S proteasome beta subunit B (PBB1) id... 281 4e-76
At3g27430.1 68416.m03428 20S proteasome beta subunit B (PBB1) id... 281 4e-76
At4g31300.1 68417.m04441 20S proteasome beta subunit A (PBA1) (P... 109 2e-24
At3g26340.1 68416.m03286 20S proteasome beta subunit E, putative... 95 5e-20
At1g13060.1 68414.m01514 20S proteasome beta subunit E1 (PBE1) (... 92 4e-19
At1g53850.1 68414.m06129 20S proteasome alpha subunit E1 (PAE1) ... 61 1e-09
At2g27020.1 68415.m03244 20S proteasome alpha subunit G (PAG1) (... 60 1e-09
At3g14290.1 68416.m01808 20S proteasome alpha subunit E2 (PAE2) ... 60 2e-09
At3g60820.1 68416.m06804 20S proteasome beta subunit F1 (PBF1) 51 1e-06
At3g22110.1 68416.m02791 20S proteasome alpha subunit C (PAC1) (... 50 2e-06
At1g79210.1 68414.m09235 20S proteasome alpha subunit B, putativ... 50 2e-06
At1g16470.1 68414.m01970 20S proteasome alpha subunit B (PAB1) (... 50 2e-06
At1g56450.1 68414.m06492 20S proteasome beta subunit G1 (PBG1) (... 50 3e-06
At1g47250.1 68414.m05231 20S proteasome alpha subunit F2 (PAF2) ... 42 4e-04
At5g42790.1 68418.m05212 20S proteasome alpha subunit F1 (PAF1) ... 41 0.001
At5g04020.1 68418.m00382 calmodulin-binding protein-related (PIC... 28 7.1
At3g24200.1 68416.m03037 monooxygenase family protein low simila... 28 9.4
>At5g40580.2 68418.m04925 20S proteasome beta subunit B (PBB2)
(PRCFC) identical to 20S proteasome beta subunit PBB2
[Arabidopsis thaliana] GI:3421104, cDNA proteasome
subunit prcfc GI:2511575
Length = 274
Score = 282 bits (691), Expect = 2e-76
Identities = 135/207 (65%), Positives = 158/207 (76%)
Frame = +2
Query: 161 MASALVPEIPVPGFSFENFQRNAFLAQKGFPAPKATKTGTTIVGIIYADGVILGADTRAT 340
M+ + V P GFSF+ +RN L QKG AP KTGTTIVG+I+ DGVILGADTRAT
Sbjct: 1 MSQSSVDIPPKGGFSFDLCKRNDMLTQKGLKAPSFLKTGTTIVGLIFKDGVILGADTRAT 60
Query: 341 ENTVVSDKNCQKIHYLASNMYCCGAGTAADTEMTTQSVASQLELQRLHTGRTVPVETAAT 520
E +V+DKNC+KIHY+A N+YCCGAGTAADTE T V+SQL L R TGR V TA T
Sbjct: 61 EGPIVADKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLRLHRYQTGRDSRVVTALT 120
Query: 521 LLKRMLFRYQGHIGAALVLGGVDRTGPHIYCIYPHGSVDKLPYATMGSGSLAAMAVFEAG 700
LLK+ LF YQGH+ AALVLGGVD TGPH++ IYPHGS D LP+ATMGSGSLAAM+VFEA
Sbjct: 121 LLKKHLFSYQGHVSAALVLGGVDITGPHLHTIYPHGSTDTLPFATMGSGSLAAMSVFEAK 180
Query: 701 WKRDMNEEEGKKLVRDAIAAGIFNDLG 781
+K + +EG KLV +AI +GIFNDLG
Sbjct: 181 YKEGLTRDEGIKLVAEAICSGIFNDLG 207
>At5g40580.1 68418.m04924 20S proteasome beta subunit B (PBB2)
(PRCFC) identical to 20S proteasome beta subunit PBB2
[Arabidopsis thaliana] GI:3421104, cDNA proteasome
subunit prcfc GI:2511575
Length = 274
Score = 282 bits (691), Expect = 2e-76
Identities = 135/207 (65%), Positives = 158/207 (76%)
Frame = +2
Query: 161 MASALVPEIPVPGFSFENFQRNAFLAQKGFPAPKATKTGTTIVGIIYADGVILGADTRAT 340
M+ + V P GFSF+ +RN L QKG AP KTGTTIVG+I+ DGVILGADTRAT
Sbjct: 1 MSQSSVDIPPKGGFSFDLCKRNDMLTQKGLKAPSFLKTGTTIVGLIFKDGVILGADTRAT 60
Query: 341 ENTVVSDKNCQKIHYLASNMYCCGAGTAADTEMTTQSVASQLELQRLHTGRTVPVETAAT 520
E +V+DKNC+KIHY+A N+YCCGAGTAADTE T V+SQL L R TGR V TA T
Sbjct: 61 EGPIVADKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLRLHRYQTGRDSRVVTALT 120
Query: 521 LLKRMLFRYQGHIGAALVLGGVDRTGPHIYCIYPHGSVDKLPYATMGSGSLAAMAVFEAG 700
LLK+ LF YQGH+ AALVLGGVD TGPH++ IYPHGS D LP+ATMGSGSLAAM+VFEA
Sbjct: 121 LLKKHLFSYQGHVSAALVLGGVDITGPHLHTIYPHGSTDTLPFATMGSGSLAAMSVFEAK 180
Query: 701 WKRDMNEEEGKKLVRDAIAAGIFNDLG 781
+K + +EG KLV +AI +GIFNDLG
Sbjct: 181 YKEGLTRDEGIKLVAEAICSGIFNDLG 207
>At3g27430.2 68416.m03429 20S proteasome beta subunit B (PBB1)
identical to 20S proteasome beta subunit PBB1 (PBB1)
GB:AAC32066 [Arabidopsis thaliana] (Genetics 149 (2),
677-692 (1998)); contains Pfam profile: PF00227
proteasome A-type and B-type;
Length = 273
Score = 281 bits (689), Expect = 4e-76
Identities = 134/207 (64%), Positives = 158/207 (76%)
Frame = +2
Query: 161 MASALVPEIPVPGFSFENFQRNAFLAQKGFPAPKATKTGTTIVGIIYADGVILGADTRAT 340
M+ + V P GFSF+ +RN L QKG AP KTGTTIVG+I+ DGVILGADTRAT
Sbjct: 1 MSQSTVDVPPKGGFSFDLCKRNDMLTQKGLKAPSFLKTGTTIVGLIFKDGVILGADTRAT 60
Query: 341 ENTVVSDKNCQKIHYLASNMYCCGAGTAADTEMTTQSVASQLELQRLHTGRTVPVETAAT 520
E +V+DKNC+KIHY+A N+YCCGAGTAADTE T V+SQL L R TGR V TA T
Sbjct: 61 EGPIVADKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLRLHRYQTGRDSRVITALT 120
Query: 521 LLKRMLFRYQGHIGAALVLGGVDRTGPHIYCIYPHGSVDKLPYATMGSGSLAAMAVFEAG 700
LLK+ LF YQGH+ AALVLGGVD TGPH++ IYPHGS D LP+ATMGSGSLAAM+VFEA
Sbjct: 121 LLKKHLFSYQGHVSAALVLGGVDITGPHLHTIYPHGSTDTLPFATMGSGSLAAMSVFEAK 180
Query: 701 WKRDMNEEEGKKLVRDAIAAGIFNDLG 781
+K + +EG KLV ++I +GIFNDLG
Sbjct: 181 YKEGLTRDEGIKLVAESICSGIFNDLG 207
>At3g27430.1 68416.m03428 20S proteasome beta subunit B (PBB1)
identical to 20S proteasome beta subunit PBB1 (PBB1)
GB:AAC32066 [Arabidopsis thaliana] (Genetics 149 (2),
677-692 (1998)); contains Pfam profile: PF00227
proteasome A-type and B-type;
Length = 267
Score = 281 bits (689), Expect = 4e-76
Identities = 134/207 (64%), Positives = 158/207 (76%)
Frame = +2
Query: 161 MASALVPEIPVPGFSFENFQRNAFLAQKGFPAPKATKTGTTIVGIIYADGVILGADTRAT 340
M+ + V P GFSF+ +RN L QKG AP KTGTTIVG+I+ DGVILGADTRAT
Sbjct: 1 MSQSTVDVPPKGGFSFDLCKRNDMLTQKGLKAPSFLKTGTTIVGLIFKDGVILGADTRAT 60
Query: 341 ENTVVSDKNCQKIHYLASNMYCCGAGTAADTEMTTQSVASQLELQRLHTGRTVPVETAAT 520
E +V+DKNC+KIHY+A N+YCCGAGTAADTE T V+SQL L R TGR V TA T
Sbjct: 61 EGPIVADKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLRLHRYQTGRDSRVITALT 120
Query: 521 LLKRMLFRYQGHIGAALVLGGVDRTGPHIYCIYPHGSVDKLPYATMGSGSLAAMAVFEAG 700
LLK+ LF YQGH+ AALVLGGVD TGPH++ IYPHGS D LP+ATMGSGSLAAM+VFEA
Sbjct: 121 LLKKHLFSYQGHVSAALVLGGVDITGPHLHTIYPHGSTDTLPFATMGSGSLAAMSVFEAK 180
Query: 701 WKRDMNEEEGKKLVRDAIAAGIFNDLG 781
+K + +EG KLV ++I +GIFNDLG
Sbjct: 181 YKEGLTRDEGIKLVAESICSGIFNDLG 207
>At4g31300.1 68417.m04441 20S proteasome beta subunit A (PBA1)
(PRCD) identical to cDNA proteasome subunit prcd
GI:2511593
Length = 233
Score = 109 bits (263), Expect = 2e-24
Identities = 57/168 (33%), Positives = 95/168 (56%), Gaps = 1/168 (0%)
Frame = +2
Query: 275 GTTIVGIIYADGVILGADTRATENTVVSDKNCQKIHYLASNMYCCGAGTAADTEMTTQSV 454
GTTI+G+ Y GV+LGAD+R + V+++ KI L N+Y C +G+AAD+++ + V
Sbjct: 12 GTTIIGVTYNGGVVLGADSRTSTGMYVANRASDKITQLTDNVYVCRSGSAADSQVVSDYV 71
Query: 455 ASQLELQRLHTGRTVPVETAATLLKRMLFRYQGHIGAALVLGGVDR-TGPHIYCIYPHGS 631
L + G+ V+ +A L++ + + + + L++GG D+ G IY I G+
Sbjct: 72 RYFLHQHTIQHGQPATVKVSANLIRMLAYNNKNMLQTGLIVGGWDKYEGGKIYGIPLGGT 131
Query: 632 VDKLPYATMGSGSLAAMAVFEAGWKRDMNEEEGKKLVRDAIAAGIFND 775
V + P+A GSGS F+ WK +M +EE ++LV A++ I D
Sbjct: 132 VVEQPFAIGGSGSSYLYGFFDQAWKDNMTKEEAEQLVVKAVSLAIARD 179
>At3g26340.1 68416.m03286 20S proteasome beta subunit E, putative
very strong similarity to SP|O23717 Proteasome subunit
beta type 5 precursor (EC 3.4.25.1) (20S proteasome
subunit E) (Proteasome epsilon chain) {Arabidopsis
thaliana}
Length = 273
Score = 95.1 bits (226), Expect = 5e-20
Identities = 68/213 (31%), Positives = 106/213 (49%), Gaps = 4/213 (1%)
Frame = +2
Query: 149 SNHEMASAL--VPEIPVPGFS-FENFQRNAFLAQKGFPAPKATKTGTTIVGIIYADGVIL 319
SN EM P +P + F+ FQ+ A K PA GTT + I+ +GV++
Sbjct: 19 SNSEMLDGFSSAPSFDLPRTTDFDGFQKKAVEMVK--PAK-----GTTTLAFIFKEGVMV 71
Query: 320 GADTRATENTVVSDKNCQKIHYLASNMYCCGAGTAADTEMTTQSVASQLELQRLHTGRTV 499
AD+RA+ +S ++ +KI + M AG AAD + +++ + L L R +
Sbjct: 72 AADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRI 131
Query: 500 PVETAATLLKRMLFRYQG-HIGAALVLGGVDRTGPHIYCIYPHGSVDKLPYATMGSGSLA 676
V A+ LL ML+ Y+G + ++ G D TGP +Y + G K ++GSGS
Sbjct: 132 SVSGASKLLANMLYSYRGMGLSVGTMIAGWDETGPGLYYVDNEGGRLKGDRFSVGSGSPY 191
Query: 677 AMAVFEAGWKRDMNEEEGKKLVRDAIAAGIFND 775
A V ++G+K DM+ EE +L R +I F D
Sbjct: 192 AYGVLDSGYKFDMSVEEASELARRSIYHATFRD 224
>At1g13060.1 68414.m01514 20S proteasome beta subunit E1 (PBE1)
(PRCE) identical to GB:O23717; identical to cDNA
proteasome subunit prce GI:2511595
Length = 274
Score = 92.3 bits (219), Expect = 4e-19
Identities = 61/196 (31%), Positives = 96/196 (48%), Gaps = 1/196 (0%)
Frame = +2
Query: 191 VPGFSFENFQRNAFLAQKGFPAPKATKTGTTIVGIIYADGVILGADTRATENTVVSDKNC 370
VP F + +K K K GTT + I+ GV++ AD+RA+ +S ++
Sbjct: 30 VPSFDLPRTKEFDGFQKKAKDMLKHAK-GTTTLAFIFKGGVMVAADSRASMGGYISSQSV 88
Query: 371 QKIHYLASNMYCCGAGTAADTEMTTQSVASQLELQRLHTGRTVPVETAATLLKRMLFRYQ 550
+KI + M AG AAD + +++ + L L R + V A+ LL ML+ Y+
Sbjct: 89 KKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVSGASKLLANMLYSYR 148
Query: 551 G-HIGAALVLGGVDRTGPHIYCIYPHGSVDKLPYATMGSGSLAAMAVFEAGWKRDMNEEE 727
G + ++ G D TGP +Y + G K ++GSGS A V ++G+K DM+ EE
Sbjct: 149 GMGLSVGTMIAGWDETGPGLYYVDNEGGRLKGDRFSVGSGSPYAYGVLDSGYKYDMSVEE 208
Query: 728 GKKLVRDAIAAGIFND 775
+L R +I F D
Sbjct: 209 ASELARRSIYHATFRD 224
>At1g53850.1 68414.m06129 20S proteasome alpha subunit E1 (PAE1)
identical to 20S proteasome subunit PAE1 GI:3421087 from
[Arabidopsis thaliana]
Length = 237
Score = 60.9 bits (141), Expect = 1e-09
Identities = 40/170 (23%), Positives = 80/170 (47%), Gaps = 8/170 (4%)
Frame = +2
Query: 254 APKATKTGTTIVGIIYADGVILGADTRATENTVVSDKNCQKIHYLASNMYCCGAGTAADT 433
A +A K G+T +G+ +GV+L + R T + ++ + +KI + ++ C +G AD
Sbjct: 27 AIEAIKLGSTAIGVKTKEGVVLAVEKRIT-SPLLEPSSVEKIMEIDDHIGCAMSGLIADA 85
Query: 434 EMTTQSVASQLELQRLHTGRTVPVETAATLLKRMLFRY-QGH-------IGAALVLGGVD 589
+ + + R G + VE+ L + R+ +G G +L++ G D
Sbjct: 86 RTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGEEESMSRPFGVSLLIAGHD 145
Query: 590 RTGPHIYCIYPHGSVDKLPYATMGSGSLAAMAVFEAGWKRDMNEEEGKKL 739
GP +Y P G+ + +GSGS A + + + +D++ +E + +
Sbjct: 146 ENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQFNKDLSLQEAETI 195
>At2g27020.1 68415.m03244 20S proteasome alpha subunit G (PAG1)
(PRC8) identical to proteasome subunit alpha type 3
SP:O23715, GI:12644056 from [Arabidopsis thaliana];
identical to cDNA proteasome subunit prc8 GI:2511591
Length = 249
Score = 60.5 bits (140), Expect = 1e-09
Identities = 46/164 (28%), Positives = 70/164 (42%), Gaps = 5/164 (3%)
Frame = +2
Query: 254 APKATKTGTTIVGIIYADGVILGADTRATENTVVSDKNCQKIHYLASNMYCCGAGTAADT 433
A KA T+VGI DG+++G + ++ N ++IH + + AG AAD
Sbjct: 27 AAKAVDNSGTVVGIKCKDGIVMGVEKLIASKMMLPGSN-RRIHSVHRHAGMAVAGLAADG 85
Query: 434 EMTTQSVASQLELQRLHTGRTVPVE-----TAATLLKRMLFRYQGHIGAALVLGGVDRTG 598
S+ G VPV+ A+ + L+ + G ++LGG DR G
Sbjct: 86 RQIVARAKSEARSYESVYGDAVPVKELSERVASYVHLCTLYWWLRPFGCGVILGGYDRDG 145
Query: 599 PHIYCIYPHGSVDKLPYATMGSGSLAAMAVFEAGWKRDMNEEEG 730
P +Y I P G + A +G G AA E +M +EG
Sbjct: 146 PQLYMIEPSGISYRYFGAAIGKGKQAAKTEIEKLNLSEMTCKEG 189
>At3g14290.1 68416.m01808 20S proteasome alpha subunit E2 (PAE2)
identical to 20S proteasome subunit PAE2 GB:AAC32061
from [Arabidopsis thaliana]
Length = 237
Score = 60.1 bits (139), Expect = 2e-09
Identities = 40/170 (23%), Positives = 79/170 (46%), Gaps = 8/170 (4%)
Frame = +2
Query: 254 APKATKTGTTIVGIIYADGVILGADTRATENTVVSDKNCQKIHYLASNMYCCGAGTAADT 433
A +A K G+T +G+ +GV+L + R T + ++ + +KI + ++ C +G AD
Sbjct: 27 AIEAIKLGSTAIGVKTKEGVVLAVEKRIT-SPLLEPSSVEKIMEIDDHIGCAMSGLIADA 85
Query: 434 EMTTQSVASQLELQRLHTGRTVPVETAATLLKRMLFRY-QGH-------IGAALVLGGVD 589
+ + + R G + VE+ L + R+ +G G +L++ G D
Sbjct: 86 RTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGEEESMSRPFGVSLLIAGHD 145
Query: 590 RTGPHIYCIYPHGSVDKLPYATMGSGSLAAMAVFEAGWKRDMNEEEGKKL 739
GP +Y P G+ + +GSGS A + + + +D+ +E + +
Sbjct: 146 ENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQFNKDITLQEAETI 195
>At3g60820.1 68416.m06804 20S proteasome beta subunit F1 (PBF1)
Length = 223
Score = 50.8 bits (116), Expect = 1e-06
Identities = 40/140 (28%), Positives = 62/140 (44%), Gaps = 4/140 (2%)
Frame = +2
Query: 275 GTTIVGIIYADGVILGADTRATENTVVSDKNCQKIHYLASNMYCCGAGTAADTEMTTQSV 454
G T V I +D ++ ADTR + + ++ KIH LA +G AD + + +
Sbjct: 15 GGTCVAIAGSDYCVIAADTRMSTGYSILSRDYSKIHKLADRAVLSSSGFQADVKALQKVL 74
Query: 455 ASQ-LELQRLHTGRTVPVETAATLLKRMLFRYQGHIGAALVLGGVDRTGPHIYCIYPH-- 625
S+ L Q H + A L + F+ A VLGG+D G C++ +
Sbjct: 75 KSRHLIYQHQHNKQMSCPAMAQLLSNTLYFKRFFPYYAFNVLGGLDEEGKG--CVFTYDA 132
Query: 626 -GSVDKLPYATMGSGSLAAM 682
GS +++ Y GSGS M
Sbjct: 133 VGSYERVGYGAQGSGSTLIM 152
>At3g22110.1 68416.m02791 20S proteasome alpha subunit C (PAC1)
(PRC9) identical to GB:AAC32057 from [Arabidopsis
thaliana] (Genetics (1998) 149 (2), 677-692); identical
to cDNA proteasome subunit prc9 GI:2511583
Length = 250
Score = 50.4 bits (115), Expect = 2e-06
Identities = 37/168 (22%), Positives = 74/168 (44%), Gaps = 6/168 (3%)
Frame = +2
Query: 254 APKATKTGTTIVGIIYADGVILGADTRATENTVVSDKNCQKIHYLASNMYCCGAGTAADT 433
A +A + +GI+ DGV+L + + T + + + +K++ + ++ C AG +D
Sbjct: 24 AMEAIGNAGSAIGILSKDGVVLIGEKKVTSKLLQTSTSAEKMYKIDDHVACAVAGIMSDA 83
Query: 434 EMTTQSVASQLELQRLHTGRTVPVETAATLL---KRMLFRYQG--HIGAALVLGGVDR-T 595
+ + Q + +PVE L K+ ++ G G + + G D+
Sbjct: 84 NILINTARVQAQRYTFMYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKHH 143
Query: 596 GPHIYCIYPHGSVDKLPYATMGSGSLAAMAVFEAGWKRDMNEEEGKKL 739
G +Y P G+ A +G+ + AA ++ + +K D EE +L
Sbjct: 144 GFQLYMSDPSGNYGGWKAAAVGANNQAAQSILKQDYKDDATREEAVEL 191
>At1g79210.1 68414.m09235 20S proteasome alpha subunit B, putative
nearly identical to SP|O23708 Proteasome subunit alpha
type 2 (EC 3.4.25.1) (20S proteasome alpha subunit B)
{Arabidopsis thaliana} and to At1g16470
Length = 235
Score = 50.0 bits (114), Expect = 2e-06
Identities = 45/183 (24%), Positives = 77/183 (42%), Gaps = 7/183 (3%)
Frame = +2
Query: 200 FSFENFQRNAFLAQKGFPAPKATKTGTTIVGIIYADGVILGADTRATENTVVSDKNCQKI 379
FS F + L Q A A +G T +GI ++GV++ + + + +V + + QKI
Sbjct: 8 FSLTTFSPSGKLVQIEH-ALTAVGSGQTSLGIKASNGVVIATEKKLP-SILVDEASVQKI 65
Query: 380 HYLASNMYCCGAGTAADTEMTTQSVASQLELQRLHTGRTVPV----ETAATLLKRMLFRY 547
+L N+ +G D + + Q E +PV AT+++ F
Sbjct: 66 QHLTPNIGTVYSGMGPDFRVLVRKSRKQAEQYLRLYKEPIPVTQLVRETATVMQE--FTQ 123
Query: 548 QGHI---GAALVLGGVDRTGPHIYCIYPHGSVDKLPYATMGSGSLAAMAVFEAGWKRDMN 718
G + G +L++ G D GP +Y + P GS + MG A E + DM
Sbjct: 124 SGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYTEDME 183
Query: 719 EEE 727
++
Sbjct: 184 LDD 186
>At1g16470.1 68414.m01970 20S proteasome alpha subunit B (PAB1)
(PRC3) identical to proteasome subunit alpha type 2
SP:O23708, GI:6093778; identical to cDNA proteasome
subunit prc3 GI:2511573
Length = 235
Score = 50.0 bits (114), Expect = 2e-06
Identities = 45/183 (24%), Positives = 77/183 (42%), Gaps = 7/183 (3%)
Frame = +2
Query: 200 FSFENFQRNAFLAQKGFPAPKATKTGTTIVGIIYADGVILGADTRATENTVVSDKNCQKI 379
FS F + L Q A A +G T +GI ++GV++ + + + +V + + QKI
Sbjct: 8 FSLTTFSPSGKLVQIEH-ALTAVGSGQTSLGIKASNGVVIATEKKLP-SILVDEASVQKI 65
Query: 380 HYLASNMYCCGAGTAADTEMTTQSVASQLELQRLHTGRTVPV----ETAATLLKRMLFRY 547
+L N+ +G D + + Q E +PV AT+++ F
Sbjct: 66 QHLTPNIGVVYSGMGPDFRVLVRKSRKQAEQYLRLYKEPIPVTQLVRETATVMQE--FTQ 123
Query: 548 QGHI---GAALVLGGVDRTGPHIYCIYPHGSVDKLPYATMGSGSLAAMAVFEAGWKRDMN 718
G + G +L++ G D GP +Y + P GS + MG A E + DM
Sbjct: 124 SGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYTEDME 183
Query: 719 EEE 727
++
Sbjct: 184 LDD 186
>At1g56450.1 68414.m06492 20S proteasome beta subunit G1 (PBG1)
(PRCH) identical to 20S proteasome beta subunit (PBG1)
GI:3421123 [Arabidopsis thaliana]; identical to cDNA
proteasome subunit prch GI:2511597
Length = 246
Score = 49.6 bits (113), Expect = 3e-06
Identities = 37/172 (21%), Positives = 73/172 (42%), Gaps = 4/172 (2%)
Frame = +2
Query: 272 TGTTIVGIIYADGVILGADTRATENTVVSDKNCQKIHYLASNMYCCGAGTAAD-TEMTTQ 448
TGT+IV I Y DGV++ +D + + + KN +++ + + +G +D E+
Sbjct: 30 TGTSIVAIKYKDGVLMASDMGGSYGSTLRYKNIERVKAIGKHSLLGASGEISDFQEILRY 89
Query: 449 SVASQLELQRLHTGRTVPVETAATLLKRMLFRYQGHIGA---ALVLGGVDRTGPHIYCIY 619
L G ++ + L R+++ + LVLGGV ++ +
Sbjct: 90 LDELTLNDNMWDDGNSLGPKEIHNYLTRVMYNRRNKFNPLWNTLVLGGVKNGKSYLGMVS 149
Query: 620 PHGSVDKLPYATMGSGSLAAMAVFEAGWKRDMNEEEGKKLVRDAIAAGIFND 775
G + + G G+ A + W D++ E+G KL+ + ++ D
Sbjct: 150 MIGVSFEDDHVATGFGNHLARPILRDEWHADLSFEDGVKLLEKCMRVLLYRD 201
>At1g47250.1 68414.m05231 20S proteasome alpha subunit F2 (PAF2)
(PRC2B) (PRS1) identical to GB:AAC32063 from
[Arabidopsis thaliana] (Genetics 149 (2), 677-692
(1998)); identical to cDNA proteasome subunit prc2b
GI:2511585
Length = 277
Score = 42.3 bits (95), Expect = 4e-04
Identities = 41/172 (23%), Positives = 69/172 (40%), Gaps = 3/172 (1%)
Frame = +2
Query: 254 APKATKTGTTIVGIIYADGVILGADTRATENTVVSDKNCQKI--HYLASNMYCCGAGTAA 427
A +A K G+ +G+ V+L +A + K+ H + G
Sbjct: 25 AMEAVKQGSAAIGLRSRSHVVLACVNKAQSELSSHQRKIFKVDDHIGVAIAGLTADGRVL 84
Query: 428 DTEMTTQSVASQLELQR-LHTGRTVPVETAATLLKRMLFRYQGHIGAALVLGGVDRTGPH 604
M ++S+ + L GR V V A ++ G L++GG+D +G H
Sbjct: 85 SRYMRSESINHSFTYESPLPVGRLV-VHLADKAQVCTQRSWKRPYGVGLLVGGLDESGAH 143
Query: 605 IYCIYPHGSVDKLPYATMGSGSLAAMAVFEAGWKRDMNEEEGKKLVRDAIAA 760
+Y P G+ + +GS S AA E ++ E + L++DAI A
Sbjct: 144 LYYNCPSGNYFEYQAFAIGSRSQAAKTYLERKFE-SFQESSKEDLIKDAIMA 194
>At5g42790.1 68418.m05212 20S proteasome alpha subunit F1 (PAF1)
(gb|AAC32062.1)
Length = 278
Score = 41.1 bits (92), Expect = 0.001
Identities = 40/172 (23%), Positives = 69/172 (40%), Gaps = 3/172 (1%)
Frame = +2
Query: 254 APKATKTGTTIVGIIYADGVILGADTRATENTVVSDKNCQKI--HYLASNMYCCGAGTAA 427
A +A K G+ +G+ V+L +A + K+ H + G
Sbjct: 25 AMEAVKQGSAAIGLRSRSHVVLACVNKAQSELSSHQRKIFKVDDHIGVAIAGLTADGRVL 84
Query: 428 DTEMTTQSVASQLELQR-LHTGRTVPVETAATLLKRMLFRYQGHIGAALVLGGVDRTGPH 604
M ++S+ + L GR V V A ++ G L++GG+D +G H
Sbjct: 85 SRYMRSESINHSFTYESPLPVGRLV-VHLADKAQVCTQRSWKRPYGVGLLVGGLDESGAH 143
Query: 605 IYCIYPHGSVDKLPYATMGSGSLAAMAVFEAGWKRDMNEEEGKKLVRDAIAA 760
+Y P G+ + +GS S AA E ++ + + L++DAI A
Sbjct: 144 LYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFE-SFGDSSREDLIKDAILA 194
>At5g04020.1 68418.m00382 calmodulin-binding protein-related (PICBP)
contains similarity to potato calmodulin-binding protein
PCBP GI:17933110 from [Solanum tuberosum]
Length = 1495
Score = 28.3 bits (60), Expect = 7.1
Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 4/85 (4%)
Frame = +2
Query: 332 RATENTVVSDKNCQKIHYLASNMYCCGAGT----AADTEMTTQSVASQLELQRLHTGRTV 499
+AT ++ + + ++ + + + YC G AAD S+ + ++R R
Sbjct: 210 KATCSSAMKGSSSKRSNDVCTYRYCSLHGRRHSHAADNNAGVPSLKRFVSMRRKFMNRQK 269
Query: 500 PVETAATLLKRMLFRYQGHIGAALV 574
V LLKR L R +G +G +V
Sbjct: 270 SVNRRLVLLKRTLSRKRGPLGGRVV 294
>At3g24200.1 68416.m03037 monooxygenase family protein low
similarity to VisC [Escherichia coli][GI:216629];
contains Pfam profile: PF01360 Monooxygenase
Length = 507
Score = 27.9 bits (59), Expect = 9.4
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = +2
Query: 620 PHGSVDKLPYATMGSGSLAAMAVFEAGWKRDMNEEEGKKLVRDAIAAG 763
P+G + LP S + M EA ++ MNE++ K V DA+ +G
Sbjct: 285 PNGPIALLPIGDKFSNIVWTMDPKEASDRKLMNEDDFIKAVNDALDSG 332
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,718,492
Number of Sequences: 28952
Number of extensions: 351609
Number of successful extensions: 895
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 869
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 888
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2058178400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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