Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_A01
(817 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g54560.1 68416.m06037 histone H2A.F/Z identical to GI:2407800 173 1e-43
At2g38810.3 68415.m04767 histone H2A, putative strong similarity... 173 1e-43
At2g38810.2 68415.m04766 histone H2A, putative strong similarity... 173 1e-43
At2g38810.1 68415.m04765 histone H2A, putative strong similarity... 173 1e-43
At1g52740.1 68414.m05962 histone H2A, putative similar to histon... 173 1e-43
At4g13570.1 68417.m02114 histone H2A, putative similar to histon... 136 1e-32
At3g20670.1 68416.m02616 histone H2A, putative strong similarity... 116 1e-26
At5g54640.1 68418.m06803 histone H2A identical to histone H2A Ar... 114 8e-26
At4g27230.1 68417.m03910 histone H2A, putative strong similarity... 114 8e-26
At1g51060.1 68414.m05740 histone H2A, putative similar to histon... 114 8e-26
At1g08880.1 68414.m00988 histone H2A, putative Strong similarity... 111 5e-25
At1g54690.1 68414.m06235 histone H2A, putative strong similarity... 110 1e-24
At5g02560.1 68418.m00190 histone H2A, putative similar to histon... 107 1e-23
At5g59870.1 68418.m07507 histone H2A, putative similar to histon... 103 1e-22
At5g27670.1 68418.m03317 histone H2A, putative similar to histon... 102 3e-22
At3g29800.1 68416.m03792 AAA-type ATPase family contains Pfam pr... 31 0.69
At3g22970.1 68416.m02896 expressed protein contains Pfam profile... 31 0.91
At4g19980.1 68417.m02925 expressed protein ; expression support... 30 1.6
At5g38250.1 68418.m04611 serine/threonine protein kinase, putati... 30 2.1
At4g27840.1 68417.m03998 expressed protein 30 2.1
At5g12970.1 68418.m01487 C2 domain-containing protein contains I... 29 3.7
At1g28490.1 68414.m03503 syntaxin 61 (SYP61) / osmotic stess-sen... 29 4.9
At3g57880.1 68416.m06452 C2 domain-containing protein contains I... 28 6.4
At3g23295.1 68416.m02938 expressed protein 28 6.4
At3g02650.1 68416.m00256 pentatricopeptide (PPR) repeat-containi... 28 6.4
At1g51570.1 68414.m05804 C2 domain-containing protein contains I... 28 6.4
At5g16660.1 68418.m01950 expressed protein 28 8.5
>At3g54560.1 68416.m06037 histone H2A.F/Z identical to GI:2407800
Length = 136
Score = 173 bits (421), Expect = 1e-43
Identities = 83/94 (88%), Positives = 88/94 (93%)
Frame = +2
Query: 209 FPXGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHL 388
FP GRIHR LK R ++HGRVGATAAVY+A+ILEYLTAEVLELAGNASKDLKVKRITPRHL
Sbjct: 39 FPVGRIHRQLKTRVSAHGRVGATAAVYTASILEYLTAEVLELAGNASKDLKVKRITPRHL 98
Query: 389 QLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGK 490
QLAIRGDEELD+LIK TIAGGGVIPHIHKSLI K
Sbjct: 99 QLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINK 132
>At2g38810.3 68415.m04767 histone H2A, putative strong similarity to
histone H2A.F/Z Arabidopsis thaliana GI:2407800;
contains Pfam profile PF00125 Core histone H2A/H2B/H3/H4
Length = 136
Score = 173 bits (421), Expect = 1e-43
Identities = 88/111 (79%), Positives = 96/111 (86%), Gaps = 4/111 (3%)
Frame = +2
Query: 170 ESCLKIS*SRTSX----FPXGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELA 337
+S K S SR+S FP GRIHR LK R ++HGRVGATAAVY+A+ILEYLTAEVLELA
Sbjct: 22 DSVKKKSISRSSRAGIQFPVGRIHRQLKQRVSAHGRVGATAAVYTASILEYLTAEVLELA 81
Query: 338 GNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGK 490
GNASKDLKVKRITPRHLQLAIRGDEELD+LIK TIAGGGVIPHIHKSL+ K
Sbjct: 82 GNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLVNK 132
>At2g38810.2 68415.m04766 histone H2A, putative strong similarity to
histone H2A.F/Z Arabidopsis thaliana GI:2407800;
contains Pfam profile PF00125 Core histone H2A/H2B/H3/H4
Length = 136
Score = 173 bits (421), Expect = 1e-43
Identities = 88/111 (79%), Positives = 96/111 (86%), Gaps = 4/111 (3%)
Frame = +2
Query: 170 ESCLKIS*SRTSX----FPXGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELA 337
+S K S SR+S FP GRIHR LK R ++HGRVGATAAVY+A+ILEYLTAEVLELA
Sbjct: 22 DSVKKKSISRSSRAGIQFPVGRIHRQLKQRVSAHGRVGATAAVYTASILEYLTAEVLELA 81
Query: 338 GNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGK 490
GNASKDLKVKRITPRHLQLAIRGDEELD+LIK TIAGGGVIPHIHKSL+ K
Sbjct: 82 GNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLVNK 132
>At2g38810.1 68415.m04765 histone H2A, putative strong similarity to
histone H2A.F/Z Arabidopsis thaliana GI:2407800;
contains Pfam profile PF00125 Core histone H2A/H2B/H3/H4
Length = 136
Score = 173 bits (421), Expect = 1e-43
Identities = 88/111 (79%), Positives = 96/111 (86%), Gaps = 4/111 (3%)
Frame = +2
Query: 170 ESCLKIS*SRTSX----FPXGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELA 337
+S K S SR+S FP GRIHR LK R ++HGRVGATAAVY+A+ILEYLTAEVLELA
Sbjct: 22 DSVKKKSISRSSRAGIQFPVGRIHRQLKQRVSAHGRVGATAAVYTASILEYLTAEVLELA 81
Query: 338 GNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGK 490
GNASKDLKVKRITPRHLQLAIRGDEELD+LIK TIAGGGVIPHIHKSL+ K
Sbjct: 82 GNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLVNK 132
>At1g52740.1 68414.m05962 histone H2A, putative similar to histone
H2A.F/Z Arabidopsis thaliana GI:2407800; contains Pfam
profile PF00125 Core histone H2A/H2B/H3/H4
Length = 134
Score = 173 bits (421), Expect = 1e-43
Identities = 83/94 (88%), Positives = 89/94 (94%)
Frame = +2
Query: 209 FPXGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHL 388
FP GR+HR LK R+T+HGRVGATAAVY+AAILEYLTAEVLELAGNASKDLKVKRI+PRHL
Sbjct: 37 FPVGRVHRLLKTRSTAHGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRISPRHL 96
Query: 389 QLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGK 490
QLAIRGDEELD+LIK TIAGGGVIPHIHKSLI K
Sbjct: 97 QLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINK 130
>At4g13570.1 68417.m02114 histone H2A, putative similar to histone
H2A.F/Z from Arabidopsis thaliana GI:2407800, histone
H2A.F/Z Strongylocentrotus purpuratus SP|P08991, histone
H2A variant Drosophila melanogaster SP|P08985; contains
Pfam profile PF00125 Core histone H2A/H2B/H3/H4
Length = 118
Score = 136 bits (330), Expect = 1e-32
Identities = 65/88 (73%), Positives = 71/88 (80%)
Frame = +2
Query: 209 FPXGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHL 388
F RIH+ LKNR ++H VGAT VY +ILEYLT EVL+LA N SKDLKVKRITPRHL
Sbjct: 31 FQVARIHKQLKNRVSAHSSVGATDVVYMTSILEYLTTEVLQLAENTSKDLKVKRITPRHL 90
Query: 389 QLAIRGDEELDSLIKATIAGGGVIPHIH 472
QLAIRGDEELD+LIK TI GG VIPHIH
Sbjct: 91 QLAIRGDEELDTLIKGTIIGGSVIPHIH 118
>At3g20670.1 68416.m02616 histone H2A, putative strong similarity to
histone H2A GB:AAF64418 GI:7595337 from Arabidopsis
thaliana, Triticum aestivum GI:536892; contains Pfam
profile PF00125 Core histone H2A/H2B/H3/H4
Length = 132
Score = 116 bits (280), Expect = 1e-26
Identities = 62/102 (60%), Positives = 72/102 (70%), Gaps = 1/102 (0%)
Frame = +2
Query: 209 FPXGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHL 388
FP GRI R LKN + RVGA A VY AA+LEYL AEVLELAGNA++D K RI PRH+
Sbjct: 27 FPVGRIARFLKNGKYAT-RVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHI 85
Query: 389 QLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKKGGPGAP 511
QLA+R DEEL L+ TIA GGV+P+IH L+ KK G P
Sbjct: 86 QLAVRNDEELSKLLGDVTIANGGVMPNIHSLLLPKKAGASKP 127
>At5g54640.1 68418.m06803 histone H2A identical to histone H2A
Arabidopsis thaliana GI:7595337
Length = 130
Score = 114 bits (274), Expect = 8e-26
Identities = 61/102 (59%), Positives = 71/102 (69%), Gaps = 1/102 (0%)
Frame = +2
Query: 209 FPXGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHL 388
FP GRI R LK + RVGA A VY AA+LEYL AEVLELAGNA++D K RI PRH+
Sbjct: 27 FPVGRIARFLKAGKYAE-RVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHI 85
Query: 389 QLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKKGGPGAP 511
QLA+R DEEL L+ TIA GGV+P+IH L+ KK G P
Sbjct: 86 QLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKAGASKP 127
>At4g27230.1 68417.m03910 histone H2A, putative strong similarity to
histone H2A Arabidopsis thaliana GI:7595337, Triticum
aestivum GI:536892, Picea abies SP|P35063; contains Pfam
profile PF00125 Core histone H2A/H2B/H3/H4
Length = 131
Score = 114 bits (274), Expect = 8e-26
Identities = 61/102 (59%), Positives = 71/102 (69%), Gaps = 1/102 (0%)
Frame = +2
Query: 209 FPXGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHL 388
FP GRI R LK + RVGA A VY AA+LEYL AEVLELAGNA++D K RI PRH+
Sbjct: 27 FPVGRIARFLKAGKYAE-RVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHI 85
Query: 389 QLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKKGGPGAP 511
QLA+R DEEL L+ TIA GGV+P+IH L+ KK G P
Sbjct: 86 QLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKAGSSKP 127
>At1g51060.1 68414.m05740 histone H2A, putative similar to histone
H2A GI:7595337 from Arabidopsis thaliana, Triticum
aestivum GI:536892, Picea abies SP|P35063; contains Pfam
profile PF00125 Core histone H2A/H2B/H3/H4
Length = 132
Score = 114 bits (274), Expect = 8e-26
Identities = 61/102 (59%), Positives = 71/102 (69%), Gaps = 1/102 (0%)
Frame = +2
Query: 209 FPXGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHL 388
FP GRI R LK + RVGA A VY AA+LEYL AEVLELAGNA++D K RI PRH+
Sbjct: 27 FPVGRIARFLKKGKYAE-RVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHI 85
Query: 389 QLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKKGGPGAP 511
QLA+R DEEL L+ TIA GGV+P+IH L+ KK G P
Sbjct: 86 QLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGASKP 127
>At1g08880.1 68414.m00988 histone H2A, putative Strong similarity to
histone H2A Cicer arietinum SP|O65759, Picea abies
SP|P35063; contains Pfam profile PF00125 Core histone
H2A/H2B/H3/H4; ESTs gb|ATTS3874,gb|T46627,gb|T14194 come
from this gene
Length = 142
Score = 111 bits (267), Expect = 5e-25
Identities = 58/98 (59%), Positives = 72/98 (73%), Gaps = 1/98 (1%)
Frame = +2
Query: 209 FPXGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHL 388
FP GRI R LK+ + RVGA A VY +A+LEYL AEVLELAGNA++D K RI PRH+
Sbjct: 33 FPVGRIARFLKSGKYAE-RVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKTRIVPRHI 91
Query: 389 QLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKKGG 499
QLA+R DEEL L+ TIA GGV+P+IH++L+ K G
Sbjct: 92 QLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPSKVG 129
>At1g54690.1 68414.m06235 histone H2A, putative strong similarity to
histone H2A GI:3204129 SP|O65759 from Cicer arietinum,
Picea abies SP|P35063; contains Pfam profile PF00125
Core histone H2A/H2B/H3/H4
Length = 142
Score = 110 bits (264), Expect = 1e-24
Identities = 58/98 (59%), Positives = 71/98 (72%), Gaps = 1/98 (1%)
Frame = +2
Query: 209 FPXGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHL 388
FP GRI R LK + RVGA A VY +A+LEYL AEVLELAGNA++D K RI PRH+
Sbjct: 33 FPVGRIARFLKAGKYAE-RVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKTRIVPRHI 91
Query: 389 QLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKKGG 499
QLA+R DEEL L+ TIA GGV+P+IH++L+ K G
Sbjct: 92 QLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPSKVG 129
>At5g02560.1 68418.m00190 histone H2A, putative similar to histone
H2A from Pisum sativum SP|P25470, Zea mays SP|P40280,
Petroselinum crispum SP|P19177; contains Pfam profile
PF00125 Core histone H2A/H2B/H3/H4
Length = 153
Score = 107 bits (256), Expect = 1e-23
Identities = 59/101 (58%), Positives = 71/101 (70%), Gaps = 1/101 (0%)
Frame = +2
Query: 209 FPXGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHL 388
FP GRI R+LK S RVG A VY AA+LEYL AEVLELAGNA++D K RI PRH+
Sbjct: 35 FPVGRIGRYLKKGRYSK-RVGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHV 93
Query: 389 QLAIRGDEELDSLIK-ATIAGGGVIPHIHKSLIGKKGGPGA 508
LA+R DEEL +L+K TIA GGV+P+I+ L+ KK A
Sbjct: 94 LLAVRNDEELGTLLKGVTIAHGGVLPNINPILLPKKSEKAA 134
>At5g59870.1 68418.m07507 histone H2A, putative similar to histone
H2A Petroselinum crispum SP|P19177, Lycopersicon
esculentum SP|P25469, Zea mays SP|P40280; contains Pfam
profile PF00125 Core histone H2A/H2B/H3/H4
Length = 150
Score = 103 bits (247), Expect = 1e-22
Identities = 57/96 (59%), Positives = 67/96 (69%), Gaps = 1/96 (1%)
Frame = +2
Query: 209 FPXGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHL 388
FP GRI R LK + R+G A VY AA+LEYL AEVLELAGNA++D K RI PRHL
Sbjct: 35 FPVGRITRFLKKGRYAQ-RLGGGAPVYMAAVLEYLAAEVLELAGNAARDNKKSRIIPRHL 93
Query: 389 QLAIRGDEELDSLIK-ATIAGGGVIPHIHKSLIGKK 493
LAIR DEEL L+ TIA GGV+P+I+ L+ KK
Sbjct: 94 LLAIRNDEELGKLLSGVTIAHGGVLPNINSVLLPKK 129
>At5g27670.1 68418.m03317 histone H2A, putative similar to histone
H2A Lycopersicon esculentum SP|P25469, Pisum sativum
SP|P25470, Petroselinum crispum SP|P19177; contains Pfam
profile PF00125 Core histone H2A/H2B/H3/H4
Length = 150
Score = 102 bits (244), Expect = 3e-22
Identities = 57/96 (59%), Positives = 68/96 (70%), Gaps = 1/96 (1%)
Frame = +2
Query: 209 FPXGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHL 388
FP GRI R+LK + R G+ A VY AA+LEYL AEVLELAGNA++D K RI PRHL
Sbjct: 36 FPVGRIARYLKKGRYAL-RYGSGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRINPRHL 94
Query: 389 QLAIRGDEELDSLIK-ATIAGGGVIPHIHKSLIGKK 493
LAIR DEEL L+ TIA GGV+P+I+ L+ KK
Sbjct: 95 CLAIRNDEELGRLLHGVTIASGGVLPNINPVLLPKK 130
>At3g29800.1 68416.m03792 AAA-type ATPase family contains Pfam
profile: ATPase family PF00004
Length = 440
Score = 31.5 bits (68), Expect = 0.69
Identities = 19/73 (26%), Positives = 32/73 (43%)
Frame = +2
Query: 221 RIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAI 400
R+ RH HG GA AAI +YL +V + D +R+ R +I
Sbjct: 193 RVGRHWMRYYLLHGLPGAGKTSLVAAIAKYLNFDVYNITQGVKTDFDTRRLIRRVEDSSI 252
Query: 401 RGDEELDSLIKAT 439
E++D+ ++ +
Sbjct: 253 LLVEDIDTSLEGS 265
>At3g22970.1 68416.m02896 expressed protein contains Pfam profile
PF04720: Protein of unknown function (DUF506)
Length = 370
Score = 31.1 bits (67), Expect = 0.91
Identities = 15/31 (48%), Positives = 18/31 (58%)
Frame = -3
Query: 170 RPWLYQNLYPLYHRPF*NVYHTITTTTREQP 78
+P L L L+ RPF NV TTTT E+P
Sbjct: 26 KPVLKSRLKRLFDRPFTNVLRNSTTTTTEKP 56
>At4g19980.1 68417.m02925 expressed protein ; expression supported
by MPSS
Length = 127
Score = 30.3 bits (65), Expect = 1.6
Identities = 18/36 (50%), Positives = 19/36 (52%)
Frame = +1
Query: 268 RSYGSSLFCRYFGISYSRGFGVGGKCV*RFKSEAYY 375
R GSSL CRY +SYS F GG C E YY
Sbjct: 57 RRQGSSLQCRYDPMSYSLNFD-GGACGTLPDDEDYY 91
>At5g38250.1 68418.m04611 serine/threonine protein kinase, putative
similar to receptor serine/threonine kinase PR55K
gi|1235680|gb|AAC49208; contains protein kinase domain,
Pfam:PF00069; contains serine/threonine protein kinase
domain, INTERPRO:IPR002290
Length = 579
Score = 29.9 bits (64), Expect = 2.1
Identities = 24/82 (29%), Positives = 28/82 (34%), Gaps = 1/82 (1%)
Frame = -1
Query: 346 RISRQLQNLCCKIFQNSGRIN-CCRSSYAPVACCPILKMPMNSSXREX*SPALADLETAF 170
+IS C NSG CC + P C MN+ P L + TAF
Sbjct: 206 KISEMSGQECVTTDGNSGFTRFCCTNVSGPEISCLTSITTMNNGTYSDNRPFLVTIGTAF 265
Query: 169 XLGFTRIFTRFTTAHFETCTTL 104
L RI H E TL
Sbjct: 266 YLNERRIAKAARIQHLEALGTL 287
>At4g27840.1 68417.m03998 expressed protein
Length = 260
Score = 29.9 bits (64), Expect = 2.1
Identities = 19/61 (31%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Frame = +2
Query: 302 LEYLTAEVLELAGNASKDLKVKRITPRHLQLAIR-GDEELDSLIKATIAGGGVIPHIHKS 478
L+ + AE+ + GN +KDL+++ +PR + I+ ++ LDS GG ++P + K
Sbjct: 117 LDPVFAEIAAIGGNHNKDLELEFGSPRSIAREIKSNNQSLDS--SKGRKGGALMPLLGKP 174
Query: 479 L 481
L
Sbjct: 175 L 175
>At5g12970.1 68418.m01487 C2 domain-containing protein contains
INTERPRO:IPR000008 C2 domain
Length = 769
Score = 29.1 bits (62), Expect = 3.7
Identities = 11/18 (61%), Positives = 14/18 (77%), Gaps = 2/18 (11%)
Frame = +1
Query: 436 NYRWRRRHPTH--TQISH 483
N+RWR RHP H T++SH
Sbjct: 628 NFRWRPRHPPHMDTRLSH 645
>At1g28490.1 68414.m03503 syntaxin 61 (SYP61) / osmotic
stess-sensitive mutant 1 (OSM1) identical to SP|Q946Y7
Syntaxin 61 (AtSYP61) (Osmotic stess-sensitive mutant 1)
{Arabidopsis thaliana}; identical to cDNA syntaxin of
plants 61 (SYP61) GI:16041649
Length = 245
Score = 28.7 bits (61), Expect = 4.9
Identities = 18/52 (34%), Positives = 26/52 (50%)
Frame = +2
Query: 338 GNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKK 493
G D V+ + R + L + DEELD L K+ GGV IH L+ ++
Sbjct: 137 GGRDDDGFVQSESDRQMLLIKQQDEELDELSKSVQRIGGVGLTIHDELVAQE 188
>At3g57880.1 68416.m06452 C2 domain-containing protein contains
INTERPRO:IPR000008 C2 domain
Length = 773
Score = 28.3 bits (60), Expect = 6.4
Identities = 11/17 (64%), Positives = 13/17 (76%), Gaps = 2/17 (11%)
Frame = +1
Query: 439 YRWRRRHPTH--TQISH 483
YRWR RHP H T++SH
Sbjct: 633 YRWRPRHPPHMDTRLSH 649
>At3g23295.1 68416.m02938 expressed protein
Length = 74
Score = 28.3 bits (60), Expect = 6.4
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = -2
Query: 720 KSPYSLHIS-ITYSYIFSPDQQFQSHHCPLH 631
K + L IS T++Y+ S D Q HH P+H
Sbjct: 5 KRHFDLCISRFTHTYVRSSDTQTHQHHVPVH 35
>At3g02650.1 68416.m00256 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 1077
Score = 28.3 bits (60), Expect = 6.4
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Frame = +2
Query: 263 RVGATAAVY---SAAILEYLTAEVLELAGNASKDLKVKRITPRHLQ 391
++G VY S IL +L A +L ++ NAS++L V RI+ + Q
Sbjct: 483 KIGRLVEVYVYGSWQILAFLAAVLLLISQNASRNLAVTRISKKKTQ 528
>At1g51570.1 68414.m05804 C2 domain-containing protein contains
INTERPRO:IPR000008 C2 domain
Length = 776
Score = 28.3 bits (60), Expect = 6.4
Identities = 11/17 (64%), Positives = 13/17 (76%), Gaps = 2/17 (11%)
Frame = +1
Query: 439 YRWRRRHPTH--TQISH 483
YRWR RHP H T++SH
Sbjct: 636 YRWRPRHPPHMDTRLSH 652
>At5g16660.1 68418.m01950 expressed protein
Length = 168
Score = 27.9 bits (59), Expect = 8.5
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -1
Query: 583 LCRCVTTAGIKCSIILSSHNLKLNGCTRTAFLSN 482
+ C+ TA + S + SH +K NG + T LS+
Sbjct: 1 MASCIATAPLSLSGVSQSHYVKANGLSTTTKLSS 34
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,727,750
Number of Sequences: 28952
Number of extensions: 335988
Number of successful extensions: 774
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 736
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 762
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1863090400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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