Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P30_F_C19
         (886 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292375-1|CAL23187.2|  311|Tribolium castaneum gustatory recept...    23   4.2  
DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped prot...    22   7.4  
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    22   7.4  
AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment h...    22   7.4  

>AM292375-1|CAL23187.2|  311|Tribolium castaneum gustatory receptor
           candidate 54 protein.
          Length = 311

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -1

Query: 100 TFIMIY*FVFVLTLF*YPLDVKGC*VV 20
           TF +I+  VFV TL    L + GC VV
Sbjct: 209 TFAIIHLSVFVYTLVSVILIIMGCDVV 235


>DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped
           protein.
          Length = 126

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +2

Query: 365 CRYQLRTATRKRSLLPSATREPDLQPHSSDRTG 463
           C+Y  R  T+  +LL       D +P+S D  G
Sbjct: 82  CKYCNRQFTKSYNLLIHERTHTDERPYSCDICG 114


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +1

Query: 736 EAPTAVANAYSTGRGGV 786
           + PT+ A A+S  RGGV
Sbjct: 8   DTPTSSAPAFSEQRGGV 24


>AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment
           homeodomain protein protein.
          Length = 232

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 14/34 (41%), Positives = 16/34 (47%)
 Frame = -3

Query: 842 FTIFHPGRGPP*XVAWLVATPPRPVLYALATAVG 741
           F IF PG  PP    +L A   RP  +A   A G
Sbjct: 193 FGIF-PGGAPPLVSPFLAAMAHRPPHFAFPGAPG 225


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,365
Number of Sequences: 336
Number of extensions: 4469
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24513621
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)