Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P30_F_C19
         (886 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   4.9  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   4.9  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   8.6  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = -3

Query: 833 FHPGRGPP*XVAWLVATPPRPVLYALATAVGASGTTCGPTSPSEEHWEE 687
           F PG+G    +   ++TP    L     A+GA G   GP  P ++  +E
Sbjct: 171 FEPGKGLGKQLQG-ISTPVEAHLRKGRGAIGAYGPEKGPKVPEKKKEDE 218


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = -3

Query: 788 ATPPRPVLYALATAVGASGTTCGPTSPSEEHWEERGCG 675
           ATP   V  + ATA   +GTT  PT    +  +  G G
Sbjct: 239 ATPSAVVATSNATAAMTTGTTTIPTRRLRKRRQNDGEG 276


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 345 DRRRQTLADTSYVPQQENEVYYP 413
           D   QT++ T+ V Q+E E Y P
Sbjct: 338 DLTTQTVSTTADVLQEEEEEYSP 360


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 233,976
Number of Sequences: 438
Number of extensions: 5673
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28766349
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)