Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P30_F_C18
(645 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_25549| Best HMM Match : WD40 (HMM E-Value=0.25) 32 0.46
SB_49989| Best HMM Match : GRP (HMM E-Value=2.3) 32 0.46
SB_22840| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 32 0.46
SB_31213| Best HMM Match : SNF2_N (HMM E-Value=0) 31 1.1
SB_30516| Best HMM Match : GETHR (HMM E-Value=0.9) 31 1.1
SB_56656| Best HMM Match : VWA (HMM E-Value=3.8e-26) 29 2.4
SB_36275| Best HMM Match : Extensin_2 (HMM E-Value=0.062) 29 4.3
SB_27758| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3
SB_13207| Best HMM Match : Extensin_2 (HMM E-Value=0.061) 29 4.3
SB_17329| Best HMM Match : S-antigen (HMM E-Value=0.31) 28 5.7
SB_9594| Best HMM Match : Extensin_2 (HMM E-Value=0.066) 28 7.5
SB_48138| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.5
SB_42829| Best HMM Match : Rick_17kDa_Anti (HMM E-Value=8.2) 28 7.5
SB_8451| Best HMM Match : GRP (HMM E-Value=9.6) 28 7.5
SB_53926| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
SB_39486| Best HMM Match : PsiF_repeat (HMM E-Value=5.9) 27 9.9
SB_4451| Best HMM Match : Cornifin (HMM E-Value=0.11) 27 9.9
SB_30| Best HMM Match : DNA_pol_delta_4 (HMM E-Value=2.2) 27 9.9
>SB_25549| Best HMM Match : WD40 (HMM E-Value=0.25)
Length = 506
Score = 31.9 bits (69), Expect = 0.46
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = -2
Query: 452 LYVRNHQARRGSSYHVRHHHRGSRAGSCGHRCGGQPRSKHS 330
+Y+ N A +G YH HH + HR GG+ R+ S
Sbjct: 355 IYIINRYAMQGKGYHHLHHQQADHGELELHRGGGRSRTSGS 395
>SB_49989| Best HMM Match : GRP (HMM E-Value=2.3)
Length = 181
Score = 31.9 bits (69), Expect = 0.46
Identities = 21/64 (32%), Positives = 29/64 (45%)
Frame = -2
Query: 434 QARRGSSYHVRHHHRGSRAGSCGHRCGGQPRSKHSRIWGEHRCRGHGRSQEKPRGRWGQR 255
Q RGS + HHRGS HR GQ + + RG G++++ RG Q
Sbjct: 122 QHHRGSG-QAKQHHRGSGQAKQHHRESGQAKQHY---------RGSGQAKQHHRGSGQQT 171
Query: 254 GLXG 243
G+ G
Sbjct: 172 GITG 175
Score = 31.5 bits (68), Expect = 0.61
Identities = 20/56 (35%), Positives = 25/56 (44%)
Frame = -2
Query: 434 QARRGSSYHVRHHHRGSRAGSCGHRCGGQPRSKHSRIWGEHRCRGHGRSQEKPRGR 267
Q RGS + HHRGS HR GQ + +H R G+ + G Q K R
Sbjct: 92 QHHRGSG-QAKQHHRGSGQAKQHHRGSGQAK-QHHRGSGQAKQHHRGSGQAKQHHR 145
Score = 29.9 bits (64), Expect = 1.9
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = -2
Query: 416 SYHVRHHHRGSRAGSCGHRCGGQPRSKH-SRIWGEHRCRGHGRSQEKPRG 270
S + HHRGS HR GQ + H + RG G++++ RG
Sbjct: 67 SGQAKQHHRGSGQAKQHHRGSGQAKQHHRGSGQAKQHHRGSGQAKQHHRG 116
>SB_22840| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 4002
Score = 31.9 bits (69), Expect = 0.46
Identities = 20/70 (28%), Positives = 28/70 (40%)
Frame = -2
Query: 440 NHQARRGSSYHVRHHHRGSRAGSCGHRCGGQPRSKHSRIWGEHRCRGHGRSQEKPRGRWG 261
+++ R G H + G R G C GG R+ I R + R + + G W
Sbjct: 3245 HNECRSGPKAHNSYSAWG-RKGGCSRWTGGSWRNDVYVILKRENARLNRRRRGRKTGAWS 3303
Query: 260 QRGLXGAAWI 231
RGL WI
Sbjct: 3304 SRGLNRNQWI 3313
>SB_31213| Best HMM Match : SNF2_N (HMM E-Value=0)
Length = 919
Score = 30.7 bits (66), Expect = 1.1
Identities = 17/54 (31%), Positives = 22/54 (40%), Gaps = 4/54 (7%)
Frame = -2
Query: 479 HDGHQRCSLLYVRNHQARRGSSYHVRHHHRGSR-AGSCGH---RCGGQPRSKHS 330
H GH + HQ + +H HHHR + S GH G+ S HS
Sbjct: 416 HHGHGGLEAIQTSKHQQDQHHHHHHHHHHRHHKHRSSSGHSTTEASGRRASDHS 469
>SB_30516| Best HMM Match : GETHR (HMM E-Value=0.9)
Length = 1058
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/47 (34%), Positives = 21/47 (44%)
Frame = -2
Query: 431 ARRGSSYHVRHHHRGSRAGSCGHRCGGQPRSKHSRIWGEHRCRGHGR 291
A G+S+HV H S H Q ++H R+W H HGR
Sbjct: 360 ASHGTSWHVMARHGTSWQVMASHGTSWQVMARHGRLW--HVMARHGR 404
>SB_56656| Best HMM Match : VWA (HMM E-Value=3.8e-26)
Length = 2157
Score = 29.5 bits (63), Expect = 2.4
Identities = 15/37 (40%), Positives = 16/37 (43%)
Frame = -3
Query: 208 VRHNEQGRNEPRHSVPGHHDGRCSGTKLPQRGGMAGD 98
+RH GR R VP HH GR P MA D
Sbjct: 1625 LRHLRHGRARHRLKVPAHHRGRHRKKATPSSTDMARD 1661
>SB_36275| Best HMM Match : Extensin_2 (HMM E-Value=0.062)
Length = 406
Score = 28.7 bits (61), Expect = 4.3
Identities = 17/62 (27%), Positives = 23/62 (37%)
Frame = +2
Query: 203 PHPLSMQLH*STPPLXVHAAPIVHAASLGYAHGHDTYAHPKYDYAYSVADPHTGDHKSQH 382
PHP +P + P++ S+ H TY HP Y PHT + H
Sbjct: 135 PHPTYKHPSYPSPHIQASLLPLIPHTSIPPTP-HPTYKHPSYPTYNIPPTPHTSIPPTPH 193
Query: 383 ES 388
S
Sbjct: 194 TS 195
>SB_27758| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1926
Score = 28.7 bits (61), Expect = 4.3
Identities = 20/61 (32%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
Frame = -2
Query: 446 VRNHQARRGSSYHVRHHHRG-SRAGSCGHRCGGQPRSKHSRIWGEHRCRGHGRSQEKPRG 270
+R ++R S R RG SR G R S SR R RG GR + + R
Sbjct: 635 LRRSRSRTSLSSRSRSRDRGGSRRGKRRSRSRSSSYSSRSRSRSRSRDRGRGRKRSRRRS 694
Query: 269 R 267
R
Sbjct: 695 R 695
>SB_13207| Best HMM Match : Extensin_2 (HMM E-Value=0.061)
Length = 2735
Score = 28.7 bits (61), Expect = 4.3
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Frame = +2
Query: 239 PPLXVHAAP-IVHAASLGYAHGHDTY-AHPKYDYAYSVADPHTGDHKSQHESRDGGAVHG 412
PP+ VH P +VH + H HDTY +HP ++ +S H G + GG +G
Sbjct: 1407 PPVVVHQPPPLVHQPII---HSHDTYVSHPFFE-PFSSHVIHAGTYVGAPHFFGGGWGYG 1462
Score = 27.5 bits (58), Expect = 9.9
Identities = 19/79 (24%), Positives = 29/79 (36%), Gaps = 5/79 (6%)
Frame = +2
Query: 197 IMPHPLSMQLH*STPPLXVHAAPIVH-----AASLGYAHGHDTYAHPKYDYAYSVADPHT 361
++ H S+ +H PP+ H P+V H HDTY Y Y+ H
Sbjct: 571 VVYHQPSVVVH--RPPIVYHQPPVVFHQPPPMVRQPVMHSHDTYVAHAYHEPYASTISHA 628
Query: 362 GDHKSQHESRDGGAVHGSY 418
+ GG +G +
Sbjct: 629 ATYVGAPHYYPGGFGYGPW 647
>SB_17329| Best HMM Match : S-antigen (HMM E-Value=0.31)
Length = 646
Score = 28.3 bits (60), Expect = 5.7
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = +3
Query: 117 RCGSFVPEHRPS*CP--GTLCLGSLRPCSLCRTHC 215
RCG+F+ E + C GT C + PC+ CR C
Sbjct: 131 RCGTFIDECEGT-CTACGTHCKKTTGPCTACRDVC 164
>SB_9594| Best HMM Match : Extensin_2 (HMM E-Value=0.066)
Length = 361
Score = 27.9 bits (59), Expect = 7.5
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Frame = +2
Query: 20 HCSXLSSAKCSPKCSSLAPCWLPPTLV-SCHTTTLRQFRPRAS--SVMMPRHTMPRLITP 190
H + C +++ PC PPT V CH + L RP S + + P H+ P + P
Sbjct: 195 HSPLTAVRPCHSPPNTVRPCHSPPTAVHPCH-SPLTAVRPCHSPPNTVRPCHSPPNTVHP 253
>SB_48138| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1913
Score = 27.9 bits (59), Expect = 7.5
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = +2
Query: 329 DYAYSVADPHTGDHKSQHESRDGGAVHG 412
D+AY DPHT HK H R G + G
Sbjct: 1425 DFAYVARDPHTSKHKC-HMFRCHGNISG 1451
>SB_42829| Best HMM Match : Rick_17kDa_Anti (HMM E-Value=8.2)
Length = 127
Score = 27.9 bits (59), Expect = 7.5
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = -1
Query: 210 GCGIMSRGVMSRGIVCRGIMTDDALGRNCRSVVVWQETSVGGSQHG 73
G G+M VM G++ G+M D +G V + +GG G
Sbjct: 57 GGGVMGGSVMGDGVIGGGVMDDSVMGGGVIGGSVMGDGVMGGGVMG 102
>SB_8451| Best HMM Match : GRP (HMM E-Value=9.6)
Length = 158
Score = 27.9 bits (59), Expect = 7.5
Identities = 19/48 (39%), Positives = 22/48 (45%), Gaps = 7/48 (14%)
Frame = -2
Query: 419 SSYHVRHH-----HRGSRAGSCGH-RCGGQPRSKHSRIWG-EHRCRGH 297
SS+H HH HRG GH R GG ++ RI G H GH
Sbjct: 110 SSHHHHHHHHHHQHRGCHKAVAGHVRLGGGHHTETLRIGGHNHAHTGH 157
>SB_53926| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 93
Score = 27.5 bits (58), Expect = 9.9
Identities = 11/47 (23%), Positives = 20/47 (42%)
Frame = -2
Query: 404 RHHHRGSRAGSCGHRCGGQPRSKHSRIWGEHRCRGHGRSQEKPRGRW 264
R + SR H P ++++ + EH G + + P+G W
Sbjct: 17 RQNKSNSRQNKASHGKESNPTAEYNELTAEHNEHGRTQLRPGPQGSW 63
>SB_39486| Best HMM Match : PsiF_repeat (HMM E-Value=5.9)
Length = 91
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -2
Query: 404 RHHHRGSRAGSCGHRCGGQPRSKHSRIWGEH 312
RHHHR S + G +PR K S G++
Sbjct: 42 RHHHRSSSVPAHGRPQSTEPRLKQSTATGQN 72
>SB_4451| Best HMM Match : Cornifin (HMM E-Value=0.11)
Length = 1384
Score = 27.5 bits (58), Expect = 9.9
Identities = 16/43 (37%), Positives = 20/43 (46%)
Frame = -2
Query: 404 RHHHRGSRAGSCGHRCGGQPRSKHSRIWGEHRCRGHGRSQEKP 276
RHH CG+R S HS+ + +R R HG S KP
Sbjct: 638 RHHGGSDSKPYCGNRFRHHGGS-HSKPYCGNRFRHHGGSHSKP 679
>SB_30| Best HMM Match : DNA_pol_delta_4 (HMM E-Value=2.2)
Length = 269
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -2
Query: 404 RHHHRGSRAGSCGHRCGGQPRSKHSRIWGEH 312
RHHHR S + G +PR K S G++
Sbjct: 42 RHHHRSSSVPAHGRPQSTEPRLKQSTATGQN 72
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,283,141
Number of Sequences: 59808
Number of extensions: 426875
Number of successful extensions: 1551
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1322
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1518
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1633044375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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