Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P30_F_C17
         (744 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    24   1.1  
AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical pro...    23   2.0  
AM292322-1|CAL23134.1|  373|Tribolium castaneum gustatory recept...    23   2.6  
EF222299-1|ABN79659.1|  136|Tribolium castaneum ion transport pe...    23   3.4  
EF222297-1|ABN79657.1|  140|Tribolium castaneum ion transport pe...    23   3.4  
EF222298-1|ABN79658.1|  120|Tribolium castaneum ion transport pe...    22   4.5  

>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +2

Query: 188 YLKIYYPLFNFNQCYL 235
           YL++++ +FN   CYL
Sbjct: 525 YLRVFFTVFNVVHCYL 540


>AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical
           protein protein.
          Length = 205

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = -3

Query: 613 SILC-FVLNLSMKCRIVYTKEVINYK*INLGFIFNNQHF 500
           +I C F+  + +    V+ K  +NYK  N+G +  N  F
Sbjct: 79  AICCDFIALIVVNIVHVFRKRRVNYKDSNIGLVVANAFF 117


>AM292322-1|CAL23134.1|  373|Tribolium castaneum gustatory receptor
           candidate 1 protein.
          Length = 373

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 10/37 (27%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +2

Query: 128 ILMIXFLIQSLQFRTFCFYIYLK-IYYPLFNFNQCYL 235
           +L   F+ ++ +++ +    +L  I++ +FN  QCYL
Sbjct: 147 LLFDYFVQRNQEYKYYQILSHLSGIFFTVFNVAQCYL 183


>EF222299-1|ABN79659.1|  136|Tribolium castaneum ion transport
           peptide isoform C protein.
          Length = 136

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
 Frame = -3

Query: 520 IFNNQHFTKVDD*I*-CYNLFSPHKAHNFCT*N 425
           +++   F K+D     CY LF   + HN C  N
Sbjct: 56  VYDKSIFAKLDSICEDCYMLFREPQLHNLCRKN 88


>EF222297-1|ABN79657.1|  140|Tribolium castaneum ion transport
           peptide isoform A protein.
          Length = 140

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
 Frame = -3

Query: 520 IFNNQHFTKVDD*I*-CYNLFSPHKAHNFCT*N 425
           +++   F K+D     CY LF   + HN C  N
Sbjct: 56  VYDKSIFAKLDSICEDCYMLFREPQLHNLCRKN 88


>EF222298-1|ABN79658.1|  120|Tribolium castaneum ion transport
           peptide isoform B protein.
          Length = 120

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 10/30 (33%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
 Frame = -3

Query: 520 IFNNQHFTKVDD*I*-CYNLFSPHKAHNFC 434
           +++   F K+D     CY LF   + HN C
Sbjct: 56  VYDKSIFAKLDSICEDCYMLFREPQLHNLC 85


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,678
Number of Sequences: 336
Number of extensions: 3169
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 19819879
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)