Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P30_F_C16
(562 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 139 2e-33
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 138 3e-33
SB_56| Best HMM Match : Actin (HMM E-Value=0) 138 3e-33
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 138 4e-33
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 138 4e-33
SB_56628| Best HMM Match : Actin (HMM E-Value=0) 138 4e-33
SB_13344| Best HMM Match : Actin (HMM E-Value=1.5e-07) 124 5e-29
SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10) 48 4e-06
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 5e-04
SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07) 38 0.004
SB_3733| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.069
SB_46036| Best HMM Match : PSRT (HMM E-Value=1) 29 3.4
SB_22343| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.5
SB_30449| Best HMM Match : DUF566 (HMM E-Value=1.2) 28 6.0
SB_10094| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
SB_7332| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
SB_20153| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.9
>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 139 bits (336), Expect = 2e-33
Identities = 63/69 (91%), Positives = 67/69 (97%)
Frame = +1
Query: 34 PAIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESG 213
P +ADRMQKEI+ALAPST+KIKIIAPPERKYSVWIGGSILASLSTFQQMWISK+EYDESG
Sbjct: 281 PGLADRMQKEISALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESG 340
Query: 214 PGIVHRKCF 240
P IVHRKCF
Sbjct: 341 PAIVHRKCF 349
>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 138 bits (334), Expect = 3e-33
Identities = 63/69 (91%), Positives = 66/69 (95%)
Frame = +1
Query: 34 PAIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESG 213
P IADRMQKEIT+LAP T+KIKIIAPPERKYSVWIGGSILASLSTFQQMWISK+EYDESG
Sbjct: 308 PGIADRMQKEITSLAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESG 367
Query: 214 PGIVHRKCF 240
P IVHRKCF
Sbjct: 368 PSIVHRKCF 376
>SB_56| Best HMM Match : Actin (HMM E-Value=0)
Length = 375
Score = 138 bits (334), Expect = 3e-33
Identities = 63/69 (91%), Positives = 66/69 (95%)
Frame = +1
Query: 34 PAIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESG 213
P IADRMQKEIT+LAP T+KIKIIAPPERKYSVWIGGSILASLSTFQQMWISK+EYDESG
Sbjct: 307 PGIADRMQKEITSLAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESG 366
Query: 214 PGIVHRKCF 240
P IVHRKCF
Sbjct: 367 PSIVHRKCF 375
>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 138 bits (333), Expect = 4e-33
Identities = 63/69 (91%), Positives = 66/69 (95%)
Frame = +1
Query: 34 PAIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESG 213
P IADRMQKEI+ALAP T+KIKIIAPPERKYSVWIGGSILASLSTFQQMWISK+EYDESG
Sbjct: 270 PGIADRMQKEISALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESG 329
Query: 214 PGIVHRKCF 240
P IVHRKCF
Sbjct: 330 PAIVHRKCF 338
>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 138 bits (333), Expect = 4e-33
Identities = 63/69 (91%), Positives = 66/69 (95%)
Frame = +1
Query: 34 PAIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESG 213
P IADRMQKEI+ALAP T+KIKIIAPPERKYSVWIGGSILASLSTFQQMWISK+EYDESG
Sbjct: 307 PGIADRMQKEISALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESG 366
Query: 214 PGIVHRKCF 240
P IVHRKCF
Sbjct: 367 PSIVHRKCF 375
>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
Length = 376
Score = 138 bits (333), Expect = 4e-33
Identities = 63/69 (91%), Positives = 66/69 (95%)
Frame = +1
Query: 34 PAIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESG 213
P IADRMQKEI+ALAP T+KIKIIAPPERKYSVWIGGSILASLSTFQQMWISK+EYDESG
Sbjct: 308 PGIADRMQKEISALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESG 367
Query: 214 PGIVHRKCF 240
P IVHRKCF
Sbjct: 368 PSIVHRKCF 376
>SB_13344| Best HMM Match : Actin (HMM E-Value=1.5e-07)
Length = 149
Score = 124 bits (299), Expect = 5e-29
Identities = 56/69 (81%), Positives = 62/69 (89%)
Frame = +1
Query: 34 PAIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESG 213
P IADRMQKEI LA +++K+K+IAPPERKYSVWIGGSILASLSTFQQMWI+KEEY E G
Sbjct: 81 PGIADRMQKEIAMLANASMKVKVIAPPERKYSVWIGGSILASLSTFQQMWIAKEEYHEYG 140
Query: 214 PGIVHRKCF 240
P IVHRKCF
Sbjct: 141 PPIVHRKCF 149
>SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10)
Length = 543
Score = 48.4 bits (110), Expect = 4e-06
Identities = 21/56 (37%), Positives = 33/56 (58%)
Frame = +1
Query: 73 LAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPGIVHRKCF 240
+ P I+ ++I+ ++Y+VW GGS+LAS F + +K +YDE GP I F
Sbjct: 285 IKPKPIETQVISHHMQRYAVWFGGSMLASTPEFYSVCHTKADYDEHGPSICRHNPF 340
>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 41.5 bits (93), Expect = 5e-04
Identities = 17/42 (40%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Frame = +1
Query: 91 KIKIIAPPERKYSVWIGGSILAS-LSTFQQMWISKEEYDESG 213
KI+I PP RK+ V++GG++LA + W++++EY+E G
Sbjct: 358 KIRIEDPPRRKHMVFMGGAVLADIMKDKDSFWMTRKEYEEKG 399
>SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)
Length = 240
Score = 38.3 bits (85), Expect = 0.004
Identities = 16/42 (38%), Positives = 31/42 (73%), Gaps = 3/42 (7%)
Frame = +1
Query: 46 DRMQKEITALAPSTIKIKIIA---PPERKYSVWIGGSILASL 162
+R+ +E+ + P ++++K+I+ E++++ WIGGSILASL
Sbjct: 189 ERLNRELVSKTPPSMRLKLISNNSSVEKRFNPWIGGSILASL 230
>SB_3733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1755
Score = 34.3 bits (75), Expect = 0.069
Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Frame = +3
Query: 3 RHDPGGTPXYPG-YRRQDAEGDHRPRALDHQDQDHRSPREEV 125
+ D TP +PG YR Q G ++P+A +QDQ RS +E+V
Sbjct: 830 KQDVSQTPSFPGNYRVQYVPG-YKPKAAPYQDQVERSGQEDV 870
>SB_46036| Best HMM Match : PSRT (HMM E-Value=1)
Length = 878
Score = 28.7 bits (61), Expect = 3.4
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = +3
Query: 39 YRRQDAEGDHRPRALDHQDQDHRSPREE 122
+RRQDA DHR + DH QD PR++
Sbjct: 664 HRRQDA--DHRRQDADHHRQDVVHPRQD 689
>SB_22343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 245
Score = 28.3 bits (60), Expect = 4.5
Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 9/68 (13%)
Frame = +1
Query: 31 TPAIADRMQKEITALAPST-------IK-IKIIAPP-ERKYSVWIGGSILASLSTFQQMW 183
TP R+ +EI L S IK +K+ PP + W+GG+I SL
Sbjct: 90 TPGFKHRLMQEIYLLLQSPKYKDKLFIKTVKMHQPPVNANITAWLGGAIFGSLEVLADRS 149
Query: 184 ISKEEYDE 207
++E Y +
Sbjct: 150 TTRERYQQ 157
>SB_30449| Best HMM Match : DUF566 (HMM E-Value=1.2)
Length = 415
Score = 27.9 bits (59), Expect = 6.0
Identities = 20/81 (24%), Positives = 37/81 (45%), Gaps = 5/81 (6%)
Frame = +1
Query: 1 TVMIPVVHHXTPAIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQM 180
T + V TP + +Q T +++ + I PP+ Y ++GGSI SL+ +
Sbjct: 92 TSQLSRVEQYTPTAMNPLQSRPTRADSHSVR-QPIDPPQVTYQDYLGGSINRSLTCTPAV 150
Query: 181 WISKEE-----YDESGPGIVH 228
+ ++ Y E+G + H
Sbjct: 151 TTTSQDSRPPSYPETGARVSH 171
>SB_10094| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 178
Score = 27.9 bits (59), Expect = 6.0
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 4/39 (10%)
Frame = +1
Query: 13 PVVH--HXTP-AIADRMQKEITALAP-STIKIKIIAPPE 117
PV+H P ++ +R+ KE+ L +K KIIAPPE
Sbjct: 46 PVIHPARKVPVSLGERLDKELNRLTELGIVKEKIIAPPE 84
>SB_7332| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1894
Score = 27.9 bits (59), Expect = 6.0
Identities = 20/81 (24%), Positives = 37/81 (45%), Gaps = 5/81 (6%)
Frame = +1
Query: 1 TVMIPVVHHXTPAIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQM 180
T + V TP + +Q T +++ + I PP+ Y ++GGSI SL+ +
Sbjct: 711 TSQLSRVEQYTPTAMNPLQSRPTRADSHSVR-QPIDPPQVTYQDYLGGSINRSLTCTPAI 769
Query: 181 WISKEE-----YDESGPGIVH 228
+ ++ Y E+G + H
Sbjct: 770 TTTSQDSRPPSYPETGARVSH 790
>SB_20153| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 178
Score = 27.5 bits (58), Expect = 7.9
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 4/39 (10%)
Frame = +1
Query: 13 PVVH--HXTP-AIADRMQKEITALAP-STIKIKIIAPPE 117
PV+H P ++ +R+ KE+ L +K KIIAPPE
Sbjct: 46 PVIHPARKVPVSLGERLDKELNHLTELGIVKEKIIAPPE 84
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,566,908
Number of Sequences: 59808
Number of extensions: 279695
Number of successful extensions: 812
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 760
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 811
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1312894764
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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