Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P30_F_C16
(562 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical pr... 141 3e-34
Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical pr... 141 3e-34
Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical pr... 141 3e-34
X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein. 141 3e-34
X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein. 141 3e-34
X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein. 141 3e-34
U64601-7|AAK77622.1| 332|Caenorhabditis elegans Actin protein 4... 141 3e-34
U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4... 141 3e-34
U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4... 141 3e-34
Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical pr... 136 8e-33
X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein. 135 2e-32
AC006833-3|AAF60947.2| 436|Caenorhabditis elegans Hypothetical ... 85 3e-17
AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical... 70 1e-12
AC024200-9|AAF36012.1| 425|Caenorhabditis elegans Arp2/3 comple... 51 7e-07
Z71181-1|CAA94894.1| 395|Caenorhabditis elegans Hypothetical pr... 50 1e-06
U40799-8|AAA81487.1| 552|Caenorhabditis elegans Hypothetical pr... 44 8e-05
Z75545-1|CAB61025.1| 665|Caenorhabditis elegans Hypothetical pr... 29 3.0
Z12017-1|CAA78047.1| 458|Caenorhabditis elegans Hypothetical pr... 29 3.0
AB000913-1|BAA21715.1| 665|Caenorhabditis elegans UNC-14 protein. 29 3.0
AF040642-7|AAB94952.1| 329|Caenorhabditis elegans Collagen prot... 27 7.0
AY150815-1|AAN61049.1| 964|Caenorhabditis elegans ADR-1C protein. 27 9.2
AF100306-10|AAC68926.1| 798|Caenorhabditis elegans Hypothetical... 27 9.2
>Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.6 protein.
Length = 376
Score = 141 bits (342), Expect = 3e-34
Identities = 65/69 (94%), Positives = 67/69 (97%)
Frame = +1
Query: 34 PAIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESG 213
P IADRMQKEITALAPST+KIKIIAPPERKYSVWIGGSILASLSTFQQMWISK+EYDESG
Sbjct: 308 PGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESG 367
Query: 214 PGIVHRKCF 240
P IVHRKCF
Sbjct: 368 PSIVHRKCF 376
>Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.5 protein.
Length = 376
Score = 141 bits (342), Expect = 3e-34
Identities = 65/69 (94%), Positives = 67/69 (97%)
Frame = +1
Query: 34 PAIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESG 213
P IADRMQKEITALAPST+KIKIIAPPERKYSVWIGGSILASLSTFQQMWISK+EYDESG
Sbjct: 308 PGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESG 367
Query: 214 PGIVHRKCF 240
P IVHRKCF
Sbjct: 368 PSIVHRKCF 376
>Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.4 protein.
Length = 376
Score = 141 bits (342), Expect = 3e-34
Identities = 65/69 (94%), Positives = 67/69 (97%)
Frame = +1
Query: 34 PAIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESG 213
P IADRMQKEITALAPST+KIKIIAPPERKYSVWIGGSILASLSTFQQMWISK+EYDESG
Sbjct: 308 PGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESG 367
Query: 214 PGIVHRKCF 240
P IVHRKCF
Sbjct: 368 PSIVHRKCF 376
>X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 141 bits (342), Expect = 3e-34
Identities = 65/69 (94%), Positives = 67/69 (97%)
Frame = +1
Query: 34 PAIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESG 213
P IADRMQKEITALAPST+KIKIIAPPERKYSVWIGGSILASLSTFQQMWISK+EYDESG
Sbjct: 308 PGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESG 367
Query: 214 PGIVHRKCF 240
P IVHRKCF
Sbjct: 368 PSIVHRKCF 376
>X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 141 bits (342), Expect = 3e-34
Identities = 65/69 (94%), Positives = 67/69 (97%)
Frame = +1
Query: 34 PAIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESG 213
P IADRMQKEITALAPST+KIKIIAPPERKYSVWIGGSILASLSTFQQMWISK+EYDESG
Sbjct: 308 PGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESG 367
Query: 214 PGIVHRKCF 240
P IVHRKCF
Sbjct: 368 PSIVHRKCF 376
>X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 141 bits (342), Expect = 3e-34
Identities = 65/69 (94%), Positives = 67/69 (97%)
Frame = +1
Query: 34 PAIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESG 213
P IADRMQKEITALAPST+KIKIIAPPERKYSVWIGGSILASLSTFQQMWISK+EYDESG
Sbjct: 308 PGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESG 367
Query: 214 PGIVHRKCF 240
P IVHRKCF
Sbjct: 368 PSIVHRKCF 376
>U64601-7|AAK77622.1| 332|Caenorhabditis elegans Actin protein 4,
isoform b protein.
Length = 332
Score = 141 bits (342), Expect = 3e-34
Identities = 65/69 (94%), Positives = 67/69 (97%)
Frame = +1
Query: 34 PAIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESG 213
P IADRMQKEITALAPST+KIKIIAPPERKYSVWIGGSILASLSTFQQMWISK+EYDESG
Sbjct: 264 PGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESG 323
Query: 214 PGIVHRKCF 240
P IVHRKCF
Sbjct: 324 PSIVHRKCF 332
>U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4,
isoform c protein.
Length = 362
Score = 141 bits (342), Expect = 3e-34
Identities = 65/69 (94%), Positives = 67/69 (97%)
Frame = +1
Query: 34 PAIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESG 213
P IADRMQKEITALAPST+KIKIIAPPERKYSVWIGGSILASLSTFQQMWISK+EYDESG
Sbjct: 294 PGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESG 353
Query: 214 PGIVHRKCF 240
P IVHRKCF
Sbjct: 354 PSIVHRKCF 362
>U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4,
isoform a protein.
Length = 376
Score = 141 bits (342), Expect = 3e-34
Identities = 65/69 (94%), Positives = 67/69 (97%)
Frame = +1
Query: 34 PAIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESG 213
P IADRMQKEITALAPST+KIKIIAPPERKYSVWIGGSILASLSTFQQMWISK+EYDESG
Sbjct: 308 PGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESG 367
Query: 214 PGIVHRKCF 240
P IVHRKCF
Sbjct: 368 PSIVHRKCF 376
>Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical
protein T25C8.2 protein.
Length = 375
Score = 136 bits (330), Expect = 8e-33
Identities = 63/69 (91%), Positives = 65/69 (94%)
Frame = +1
Query: 34 PAIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESG 213
P IADRMQKEI LAPST+KIKIIAPPERKYSVWIGGSILASLSTFQQMWISK+EYDESG
Sbjct: 307 PGIADRMQKEIQHLAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESG 366
Query: 214 PGIVHRKCF 240
P IVHRKCF
Sbjct: 367 PSIVHRKCF 375
>X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein.
Length = 375
Score = 135 bits (327), Expect = 2e-32
Identities = 64/69 (92%), Positives = 66/69 (95%)
Frame = +1
Query: 34 PAIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESG 213
P IADRMQKEITALAP T+KIKIIAPPERKYSVWIGGSILASLSTFQQMWISK+EYDESG
Sbjct: 308 PGIADRMQKEITALAP-TMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESG 366
Query: 214 PGIVHRKCF 240
P IVHRKCF
Sbjct: 367 PSIVHRKCF 375
>AC006833-3|AAF60947.2| 436|Caenorhabditis elegans Hypothetical
protein ZK616.4 protein.
Length = 436
Score = 85.0 bits (201), Expect = 3e-17
Identities = 38/67 (56%), Positives = 46/67 (68%), Gaps = 3/67 (4%)
Frame = +1
Query: 46 DRMQKEITALAPSTIKIKIIAPP---ERKYSVWIGGSILASLSTFQQMWISKEEYDESGP 216
+R+ + P TIK+++ A P ERKY WIGGSIL SL TFQQMW+SK EYDESG
Sbjct: 369 ERLNYALATKCPPTIKLRVFAAPTQAERKYGAWIGGSILGSLGTFQQMWVSKAEYDESGK 428
Query: 217 GIVHRKC 237
IV +KC
Sbjct: 429 SIVEKKC 435
>AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical
protein Y53F4B.22 protein.
Length = 374
Score = 70.1 bits (164), Expect = 1e-12
Identities = 30/65 (46%), Positives = 45/65 (69%)
Frame = +1
Query: 46 DRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPGIV 225
DR+ E+ +AP+ KI+I A ER WIGGSI+ASL TF++MW+ K+EY++ G +
Sbjct: 310 DRLLGEMRKIAPADGKIRISASQERNSLTWIGGSIVASLDTFRKMWLGKKEYEDMGASAM 369
Query: 226 HRKCF 240
H++ F
Sbjct: 370 HKRFF 374
>AC024200-9|AAF36012.1| 425|Caenorhabditis elegans Arp2/3 complex
component protein 1 protein.
Length = 425
Score = 50.8 bits (116), Expect = 7e-07
Identities = 23/50 (46%), Positives = 33/50 (66%)
Frame = +1
Query: 73 LAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPGI 222
L P I +++I+ ++Y+VW GGS+LAS S F Q+ +K EY E GP I
Sbjct: 365 LKPKPIDVQVISHKMQRYAVWFGGSMLASTSEFYQVSHTKAEYMERGPSI 414
>Z71181-1|CAA94894.1| 395|Caenorhabditis elegans Hypothetical
protein K07C5.1 protein.
Length = 395
Score = 50.0 bits (114), Expect = 1e-06
Identities = 22/43 (51%), Positives = 32/43 (74%), Gaps = 2/43 (4%)
Frame = +1
Query: 91 KIKIIAPPERKYSVWIGGSILASL--STFQQMWISKEEYDESG 213
KI+I APP RK+ V++GG++LA+L Q W+SK+EY+E G
Sbjct: 341 KIRIEAPPSRKHMVFLGGAVLANLMKDRDQDFWVSKKEYEEGG 383
>U40799-8|AAA81487.1| 552|Caenorhabditis elegans Hypothetical
protein F42C5.9 protein.
Length = 552
Score = 44.0 bits (99), Expect = 8e-05
Identities = 18/55 (32%), Positives = 36/55 (65%)
Frame = +1
Query: 34 PAIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEE 198
P IA+++++E++ + P+TI ++ P R + ++G I+AS STF+ IS ++
Sbjct: 485 PGIAEKLEQELSTVVPNTIHTQVNISPWRYNAAYLGAQIVASASTFEDSCISLQQ 539
>Z75545-1|CAB61025.1| 665|Caenorhabditis elegans Hypothetical
protein K10D3.2 protein.
Length = 665
Score = 28.7 bits (61), Expect = 3.0
Identities = 14/47 (29%), Positives = 20/47 (42%)
Frame = +3
Query: 3 RHDPGGTPXYPGYRRQDAEGDHRPRALDHQDQDHRSPREEVLRMDRW 143
R D +P P + R +D D + R EE++R DRW
Sbjct: 110 RSDSARSPNRPNSLIANFVSGDATRFVDVNDNEIREANEEIIRKDRW 156
>Z12017-1|CAA78047.1| 458|Caenorhabditis elegans Hypothetical
protein R08D7.1 protein.
Length = 458
Score = 28.7 bits (61), Expect = 3.0
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = +3
Query: 3 RHDPGGTPXYPGYRRQDAEGDHRPRALDHQDQDHRSPR 116
R+D +P P R D++ D+ P D D+ PR
Sbjct: 125 RNDSDNSPPRPSRNRHDSDKDNSPPRRRRHDSDNSPPR 162
>AB000913-1|BAA21715.1| 665|Caenorhabditis elegans UNC-14 protein.
Length = 665
Score = 28.7 bits (61), Expect = 3.0
Identities = 14/47 (29%), Positives = 20/47 (42%)
Frame = +3
Query: 3 RHDPGGTPXYPGYRRQDAEGDHRPRALDHQDQDHRSPREEVLRMDRW 143
R D +P P + R +D D + R EE++R DRW
Sbjct: 110 RSDSARSPNRPNSLIANFVSGDATRFVDVNDNEIREANEEIIRKDRW 156
>AF040642-7|AAB94952.1| 329|Caenorhabditis elegans Collagen protein
68 protein.
Length = 329
Score = 27.5 bits (58), Expect = 7.0
Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Frame = +3
Query: 9 DPG--GTPXYPGYRRQDAEGDHRPRALD 86
+PG G+P PG QDA GD P A D
Sbjct: 154 NPGNDGSPGNPGTPGQDAVGDESPTAAD 181
>AY150815-1|AAN61049.1| 964|Caenorhabditis elegans ADR-1C protein.
Length = 964
Score = 27.1 bits (57), Expect = 9.2
Identities = 21/80 (26%), Positives = 33/80 (41%), Gaps = 7/80 (8%)
Frame = +1
Query: 16 VVHHXTPAIADRMQKEITALAP--STIKI-----KIIAPPERKYSVWIGGSILASLSTFQ 174
+ H TP ++K L P S + + KIIA KYS S +
Sbjct: 283 ISHQPTPKKVSAVKKAKLQLTPVESALSLLDLMQKIIAESAEKYSPVFEASEVPKDPEIP 342
Query: 175 QMWISKEEYDESGPGIVHRK 234
++ + KEE D +G + + K
Sbjct: 343 EVEVKKEEVDTNGENVANEK 362
>AF100306-10|AAC68926.1| 798|Caenorhabditis elegans Hypothetical
protein T24C4.7 protein.
Length = 798
Score = 27.1 bits (57), Expect = 9.2
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = +3
Query: 33 PGYRRQDAEGDHRPRALDHQDQDHRSPREEVLR 131
P YRRQ L Q Q HR PRE +L+
Sbjct: 181 PKYRRQVMHCSKSEHKLVLQTQKHRLPRERMLK 213
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,757,285
Number of Sequences: 27780
Number of extensions: 186531
Number of successful extensions: 524
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 506
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 522
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1155524042
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -