Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P30_F_C13
         (352 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo...    25   2.6  
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc...    25   3.4  
SPAC1B3.10c |||SEL1 repeat protein, unknown biological role|Schi...    25   4.5  
SPAC30.02c |||RNA polymerase II elongator complex subunit|Schizo...    24   7.9  

>SPBC12C2.02c |ste20|ste16|sterility protein
           Ste20|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1309

 Score = 25.4 bits (53), Expect = 2.6
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +1

Query: 142 ILSTCTFNLLKIMRMVYLLLKHLFV 216
           ILS    N+ ++   VY LL+HLF+
Sbjct: 263 ILSMLELNVSEVTASVYRLLRHLFL 287


>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 732

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +1

Query: 109 WKILRESLDTRILSTCTFNLLKIMR 183
           WKIL    DTRI  T   NLL++ R
Sbjct: 579 WKILNAKDDTRI-GTTNSNLLRLKR 602


>SPAC1B3.10c |||SEL1 repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 680

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +3

Query: 51  FHIKLL*KLSLVLTFFVGALEDIKRIIRYKNSVNVHI 161
           FH+ L  K  L + FF+ +L  + RI+  +  V+ +I
Sbjct: 8   FHVSLFLKRILSIAFFLLSLSTLLRIVNAQQYVDNNI 44


>SPAC30.02c |||RNA polymerase II elongator complex
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 281

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 9/19 (47%), Positives = 17/19 (89%)
 Frame = -3

Query: 143 ILVSNDSLNIFQCTYKKSK 87
           I+++++SLNI + TY++SK
Sbjct: 42  IIINDESLNIEKETYRESK 60


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,027,402
Number of Sequences: 5004
Number of extensions: 17609
Number of successful extensions: 38
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 106195544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)