Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P30_F_C13
         (352 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37633| Best HMM Match : DUF327 (HMM E-Value=2.1)                    27   3.2  
SB_8559| Best HMM Match : Dpy-30 (HMM E-Value=3.7e-11)                 26   9.9  

>SB_37633| Best HMM Match : DUF327 (HMM E-Value=2.1)
          Length = 355

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -3

Query: 263 ITNKTYNSKSSHKYEYTNKCFK 198
           + NK +N+  S KY++ N CF+
Sbjct: 78  VRNKAFNAIKSAKYKFYNSCFE 99


>SB_8559| Best HMM Match : Dpy-30 (HMM E-Value=3.7e-11)
          Length = 806

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 188 TILIIFNKLNVHVDRILVSNDSLNIFQC 105
           T+L  F++L +H D I +S DS +   C
Sbjct: 552 TVLNFFDELEIHPDNIDISQDSNDPKMC 579


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,145,936
Number of Sequences: 59808
Number of extensions: 116404
Number of successful extensions: 188
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 535585339
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)