Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P30_F_C13
         (352 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81487-6|CAB03996.2|  872|Caenorhabditis elegans Hypothetical pr...    27   3.8  
U39850-12|AAZ32806.1| 1336|Caenorhabditis elegans Hypothetical p...    26   6.6  
U39850-11|AAZ32807.1| 1331|Caenorhabditis elegans Hypothetical p...    26   6.6  
AF016419-8|AAG24053.1|  293|Caenorhabditis elegans Serpentine re...    26   6.6  
Z81589-5|CAB04722.1|  233|Caenorhabditis elegans Hypothetical pr...    26   8.7  
Z81481-6|CAB63435.1|  344|Caenorhabditis elegans Hypothetical pr...    26   8.7  

>Z81487-6|CAB03996.2|  872|Caenorhabditis elegans Hypothetical
           protein C54E10.1 protein.
          Length = 872

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = -3

Query: 257 NKTYNSKSSHKYEYTNKCFKSK*TILIIFNKLNVHVDRILVSNDSLN 117
           NKT   +   KY+Y +K   S+  + I  +  +  + + + SNDSLN
Sbjct: 631 NKTQARRHKRKYKYRSKGNHSRSLLGIHTSPTSSSMPQAIYSNDSLN 677


>U39850-12|AAZ32806.1| 1336|Caenorhabditis elegans Hypothetical
           protein F52C9.1a protein.
          Length = 1336

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +3

Query: 138 KNSVNVHI*FVKNNENGLFT 197
           KN++N+H+ FV+ N  GL T
Sbjct: 430 KNALNLHLCFVEKNRRGLRT 449


>U39850-11|AAZ32807.1| 1331|Caenorhabditis elegans Hypothetical
           protein F52C9.1b protein.
          Length = 1331

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +3

Query: 138 KNSVNVHI*FVKNNENGLFT 197
           KN++N+H+ FV+ N  GL T
Sbjct: 430 KNALNLHLCFVEKNRRGLRT 449


>AF016419-8|AAG24053.1|  293|Caenorhabditis elegans Serpentine
           receptor, class x protein6 protein.
          Length = 293

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +3

Query: 177 NENGLFTFKAFICVFIFM*TL*VVSFIC 260
           N+N +FTF+  I +FI + TL   S  C
Sbjct: 100 NKNNIFTFQRTIFIFIILITLTSFSAAC 127


>Z81589-5|CAB04722.1|  233|Caenorhabditis elegans Hypothetical
           protein T08G5.9 protein.
          Length = 233

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = -3

Query: 257 NKTYNSKSSHKYEYTNKCFKSK*TILIIFNKLNVHVDRILVSNDSL 120
           NKT   +   KY+Y +K   S+  + +  +  N  + + + SNDSL
Sbjct: 3   NKTQARRHKRKYKYRSKGNHSRSLLGMHTSPANSSMSQAIYSNDSL 48


>Z81481-6|CAB63435.1|  344|Caenorhabditis elegans Hypothetical
           protein C38D9.8 protein.
          Length = 344

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -3

Query: 188 TILIIFNKLNVHVDRILVSNDSLNIFQCTYKKS 90
           T L+ FN   V +DR+ +SN ++  F    KKS
Sbjct: 187 TDLLRFNNRIVFLDRVSISNHTIRNFLQVLKKS 219


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,551,856
Number of Sequences: 27780
Number of extensions: 96389
Number of successful extensions: 228
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 228
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 472561672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)