Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P30_F_C12
(577 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_24372| Best HMM Match : Ribosomal_L24e (HMM E-Value=8.5e-40) 79 3e-15
SB_44699| Best HMM Match : Ribosomal_L24e (HMM E-Value=2.2e-07) 79 3e-15
SB_32312| Best HMM Match : Ribosomal_L24e (HMM E-Value=2.2e-07) 79 3e-15
SB_5679| Best HMM Match : Ribosomal_L24e (HMM E-Value=2.2e-07) 79 3e-15
SB_35727| Best HMM Match : Ribosomal_L24e (HMM E-Value=2.1e-07) 79 3e-15
SB_6626| Best HMM Match : Ribosomal_L24e (HMM E-Value=2.2e-07) 79 3e-15
SB_41736| Best HMM Match : Ribosomal_L24e (HMM E-Value=3.2e-07) 76 2e-14
SB_49067| Best HMM Match : Ribosomal_L24e (HMM E-Value=8.8e-07) 75 3e-14
SB_12479| Best HMM Match : No HMM Matches (HMM E-Value=.) 56 2e-08
SB_27599| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.8
>SB_24372| Best HMM Match : Ribosomal_L24e (HMM E-Value=8.5e-40)
Length = 154
Score = 79.0 bits (186), Expect = 3e-15
Identities = 38/77 (49%), Positives = 48/77 (62%)
Frame = +3
Query: 36 MKIGLCAYSGYKIYPXHGKTMVKVDGKTFTFLNSKCEAAHLMRRNPR*SNMDCPVQAQVQ 215
MK+ LC YSGYKIYP HGK V+ DGK F FLN +CE A LMRRNPR + + +
Sbjct: 1 MKLELCNYSGYKIYPGHGKRYVRQDGKVFNFLNKRCERALLMRRNPREVTWTVLYRRKHK 60
Query: 216 KGPRGRTSKEXYXKDPK 266
KG + SK+ ++ K
Sbjct: 61 KGTQEEVSKKRTRRNIK 77
Score = 78.6 bits (185), Expect = 3e-15
Identities = 36/53 (67%), Positives = 43/53 (81%)
Frame = +1
Query: 178 KVTWTVLYRRKFKKGQEEEQAKXRTXRTQKFQRAIVGASLSDIMAKRNMKPEV 336
+VTWTVLYRRK KKG +EE +K RT R KFQR++ GASL +I+AKRN KPEV
Sbjct: 48 EVTWTVLYRRKHKKGTQEEVSKKRTRRNIKFQRSVQGASLDNILAKRNQKPEV 100
>SB_44699| Best HMM Match : Ribosomal_L24e (HMM E-Value=2.2e-07)
Length = 113
Score = 78.6 bits (185), Expect = 3e-15
Identities = 36/53 (67%), Positives = 43/53 (81%)
Frame = +1
Query: 178 KVTWTVLYRRKFKKGQEEEQAKXRTXRTQKFQRAIVGASLSDIMAKRNMKPEV 336
+VTWTVLYRRK KKG +EE +K RT R KFQR++ GASL +I+AKRN KPEV
Sbjct: 28 EVTWTVLYRRKHKKGTQEEVSKKRTRRNIKFQRSVQGASLDNILAKRNQKPEV 80
Score = 38.7 bits (86), Expect = 0.003
Identities = 20/51 (39%), Positives = 28/51 (54%)
Frame = +3
Query: 114 KTFTFLNSKCEAAHLMRRNPR*SNMDCPVQAQVQKGPRGRTSKEXYXKDPK 266
K F FLN +CE A LMRRNPR + + +KG + SK+ ++ K
Sbjct: 7 KVFNFLNKRCERALLMRRNPREVTWTVLYRRKHKKGTQEEVSKKRTRRNIK 57
>SB_32312| Best HMM Match : Ribosomal_L24e (HMM E-Value=2.2e-07)
Length = 90
Score = 78.6 bits (185), Expect = 3e-15
Identities = 36/53 (67%), Positives = 43/53 (81%)
Frame = +1
Query: 178 KVTWTVLYRRKFKKGQEEEQAKXRTXRTQKFQRAIVGASLSDIMAKRNMKPEV 336
+VTWTVLYRRK KKG +EE +K RT R KFQR++ GASL +I+AKRN KPEV
Sbjct: 28 EVTWTVLYRRKHKKGTQEEVSKKRTRRNIKFQRSVQGASLDNILAKRNQKPEV 80
Score = 38.7 bits (86), Expect = 0.003
Identities = 20/51 (39%), Positives = 28/51 (54%)
Frame = +3
Query: 114 KTFTFLNSKCEAAHLMRRNPR*SNMDCPVQAQVQKGPRGRTSKEXYXKDPK 266
K F FLN +CE A LMRRNPR + + +KG + SK+ ++ K
Sbjct: 7 KVFNFLNKRCERALLMRRNPREVTWTVLYRRKHKKGTQEEVSKKRTRRNIK 57
>SB_5679| Best HMM Match : Ribosomal_L24e (HMM E-Value=2.2e-07)
Length = 90
Score = 78.6 bits (185), Expect = 3e-15
Identities = 36/53 (67%), Positives = 43/53 (81%)
Frame = +1
Query: 178 KVTWTVLYRRKFKKGQEEEQAKXRTXRTQKFQRAIVGASLSDIMAKRNMKPEV 336
+VTWTVLYRRK KKG +EE +K RT R KFQR++ GASL +I+AKRN KPEV
Sbjct: 28 EVTWTVLYRRKHKKGTQEEVSKKRTRRNIKFQRSVQGASLDNILAKRNQKPEV 80
Score = 38.7 bits (86), Expect = 0.003
Identities = 20/51 (39%), Positives = 28/51 (54%)
Frame = +3
Query: 114 KTFTFLNSKCEAAHLMRRNPR*SNMDCPVQAQVQKGPRGRTSKEXYXKDPK 266
K F FLN +CE A LMRRNPR + + +KG + SK+ ++ K
Sbjct: 7 KVFNFLNKRCERALLMRRNPREVTWTVLYRRKHKKGTQEEVSKKRTRRNIK 57
>SB_35727| Best HMM Match : Ribosomal_L24e (HMM E-Value=2.1e-07)
Length = 139
Score = 78.6 bits (185), Expect = 3e-15
Identities = 36/53 (67%), Positives = 43/53 (81%)
Frame = +1
Query: 178 KVTWTVLYRRKFKKGQEEEQAKXRTXRTQKFQRAIVGASLSDIMAKRNMKPEV 336
+VTWTVLYRRK KKG +EE +K RT R KFQR++ GASL +I+AKRN KPEV
Sbjct: 63 EVTWTVLYRRKHKKGTQEEVSKKRTRRNIKFQRSVQGASLDNILAKRNQKPEV 115
Score = 41.5 bits (93), Expect = 5e-04
Identities = 21/55 (38%), Positives = 30/55 (54%)
Frame = +3
Query: 102 KVDGKTFTFLNSKCEAAHLMRRNPR*SNMDCPVQAQVQKGPRGRTSKEXYXKDPK 266
K GK F +LN +CE A LMRRNPR + + +KG + SK+ ++ K
Sbjct: 38 KFQGKVFNYLNKRCERALLMRRNPREVTWTVLYRRKHKKGTQEEVSKKRTRRNIK 92
>SB_6626| Best HMM Match : Ribosomal_L24e (HMM E-Value=2.2e-07)
Length = 90
Score = 78.6 bits (185), Expect = 3e-15
Identities = 36/53 (67%), Positives = 43/53 (81%)
Frame = +1
Query: 178 KVTWTVLYRRKFKKGQEEEQAKXRTXRTQKFQRAIVGASLSDIMAKRNMKPEV 336
+VTWTVLYRRK KKG +EE +K RT R KFQR++ GASL +I+AKRN KPEV
Sbjct: 28 EVTWTVLYRRKHKKGTQEEVSKKRTRRNIKFQRSVQGASLDNILAKRNQKPEV 80
Score = 38.7 bits (86), Expect = 0.003
Identities = 20/51 (39%), Positives = 28/51 (54%)
Frame = +3
Query: 114 KTFTFLNSKCEAAHLMRRNPR*SNMDCPVQAQVQKGPRGRTSKEXYXKDPK 266
K F FLN +CE A LMRRNPR + + +KG + SK+ ++ K
Sbjct: 7 KVFNFLNKRCERALLMRRNPREVTWTVLYRRKHKKGTQEEVSKKRTRRNIK 57
>SB_41736| Best HMM Match : Ribosomal_L24e (HMM E-Value=3.2e-07)
Length = 104
Score = 76.2 bits (179), Expect = 2e-14
Identities = 35/53 (66%), Positives = 42/53 (79%)
Frame = +1
Query: 178 KVTWTVLYRRKFKKGQEEEQAKXRTXRTQKFQRAIVGASLSDIMAKRNMKPEV 336
+VTWTVLYRR KKG +EE +K RT R KFQR++ GASL +I+AKRN KPEV
Sbjct: 28 EVTWTVLYRRMHKKGTQEEVSKKRTRRNIKFQRSVQGASLDNILAKRNQKPEV 80
Score = 38.3 bits (85), Expect = 0.004
Identities = 20/51 (39%), Positives = 27/51 (52%)
Frame = +3
Query: 114 KTFTFLNSKCEAAHLMRRNPR*SNMDCPVQAQVQKGPRGRTSKEXYXKDPK 266
K F FLN +CE A LMRRNPR + +KG + SK+ ++ K
Sbjct: 7 KVFNFLNKRCERALLMRRNPREVTWTVLYRRMHKKGTQEEVSKKRTRRNIK 57
>SB_49067| Best HMM Match : Ribosomal_L24e (HMM E-Value=8.8e-07)
Length = 90
Score = 75.4 bits (177), Expect = 3e-14
Identities = 35/53 (66%), Positives = 42/53 (79%)
Frame = +1
Query: 178 KVTWTVLYRRKFKKGQEEEQAKXRTXRTQKFQRAIVGASLSDIMAKRNMKPEV 336
+VTWTVLYR K KKG +EE +K RT R KFQR++ GASL +I+AKRN KPEV
Sbjct: 28 EVTWTVLYRCKHKKGTQEEVSKKRTRRNIKFQRSVQGASLDNILAKRNQKPEV 80
Score = 39.1 bits (87), Expect = 0.003
Identities = 20/51 (39%), Positives = 28/51 (54%)
Frame = +3
Query: 114 KTFTFLNSKCEAAHLMRRNPR*SNMDCPVQAQVQKGPRGRTSKEXYXKDPK 266
K F FLN +CE A LMRRNPR + + +KG + SK+ ++ K
Sbjct: 7 KVFNFLNKRCERALLMRRNPREVTWTVLYRCKHKKGTQEEVSKKRTRRNIK 57
>SB_12479| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 52
Score = 56.4 bits (130), Expect = 2e-08
Identities = 26/41 (63%), Positives = 32/41 (78%)
Frame = +1
Query: 214 KKGQEEEQAKXRTXRTQKFQRAIVGASLSDIMAKRNMKPEV 336
KKG +EE +K RT R KFQR++ GASL +I+AKRN KPEV
Sbjct: 2 KKGTQEEVSKKRTRRNIKFQRSVQGASLDNILAKRNQKPEV 42
>SB_27599| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2937
Score = 28.3 bits (60), Expect = 4.8
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -3
Query: 245 FFACSSSWPFLNLRLYRTVHVTLARIP 165
+FAC+ P N + T HVTL IP
Sbjct: 2679 YFACTRDLPISNFDVISTRHVTLQAIP 2705
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,685,424
Number of Sequences: 59808
Number of extensions: 222028
Number of successful extensions: 420
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 387
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 417
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1373676929
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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