Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P30_F_C12
         (577 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003151-13|AAK18907.1|  159|Caenorhabditis elegans Ribosomal pr...    60   8e-10
Z75525-5|CAA99764.1|  162|Caenorhabditis elegans Hypothetical pr...    40   0.001

>AF003151-13|AAK18907.1|  159|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 24.1 protein.
          Length = 159

 Score = 60.5 bits (140), Expect = 8e-10
 Identities = 28/66 (42%), Positives = 38/66 (57%)
 Frame = +3

Query: 36  MKIGLCAYSGYKIYPXHGKTMVKVDGKTFTFLNSKCEAAHLMRRNPR*SNMDCPVQAQVQ 215
           MK+  C YSGYKI+P HGK +V+ DGK   FL+ K      +RRNPR        + + +
Sbjct: 1   MKVETCVYSGYKIHPGHGKRLVRTDGKVQIFLSGKALKGAKLRRNPRDIRWTVLYRIKNK 60

Query: 216 KGPRGR 233
           KG  G+
Sbjct: 61  KGTHGQ 66



 Score = 43.2 bits (97), Expect = 1e-04
 Identities = 24/50 (48%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
 Frame = +1

Query: 181 VTWTVLYRRKFKKG---QEEEQAKXRTXRTQKFQRAIVGASLSDIMAKRN 321
           + WTVLYR K KKG   QE+   K      Q   RA+ G SL  I+AKRN
Sbjct: 49  IRWTVLYRIKNKKGTHGQEQVTRKKTKKSVQVVNRAVAGLSLDAILAKRN 98


>Z75525-5|CAA99764.1|  162|Caenorhabditis elegans Hypothetical
           protein C03D6.8 protein.
          Length = 162

 Score = 39.9 bits (89), Expect = 0.001
 Identities = 17/47 (36%), Positives = 23/47 (48%)
 Frame = +3

Query: 36  MKIGLCAYSGYKIYPXHGKTMVKVDGKTFTFLNSKCEAAHLMRRNPR 176
           M+I  C +    IYP HG   V+ D   F F  S+C      ++NPR
Sbjct: 1   MRIEKCYFCSSPIYPGHGIQFVRNDSTVFKFCRSRCNKLFKKKKNPR 47


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,502,649
Number of Sequences: 27780
Number of extensions: 168915
Number of successful extensions: 257
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 255
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 256
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1194789454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)