Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P30_F_C11
(853 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
J05262-1|AAA52423.1| 353|Homo sapiens FDPS protein. 135 2e-31
D14697-1|BAA03523.2| 420|Homo sapiens KIAA1293 protein. 135 2e-31
BC010004-1|AAH10004.1| 419|Homo sapiens farnesyl diphosphate sy... 135 2e-31
AL139410-1|CAI12715.1| 419|Homo sapiens farnesyl diphosphate sy... 135 2e-31
M29863-1|AAA35820.1| 346|Homo sapiens protein ( Human farnesyl ... 134 3e-31
Z47055-1|CAA87327.1| 348|Homo sapiens farnesyl pyrophosphate sy... 126 1e-28
BC050292-1|AAH50292.1| 298|Homo sapiens LOC619190 protein protein. 109 2e-23
AL139333-5|CAI15284.1| 2369|Homo sapiens dopey family member 1 p... 38 0.061
AL139333-4|CAM21599.1| 2465|Homo sapiens dopey family member 1 p... 38 0.061
AL121716-2|CAI42426.1| 2369|Homo sapiens dopey family member 1 p... 38 0.061
AL121716-1|CAI42425.2| 2465|Homo sapiens dopey family member 1 p... 38 0.061
BC071603-1|AAH71603.1| 691|Homo sapiens zinc finger protein 770... 30 9.3
AK000589-1|BAA91274.1| 186|Homo sapiens protein ( Homo sapiens ... 30 9.3
>J05262-1|AAA52423.1| 353|Homo sapiens FDPS protein.
Length = 353
Score = 135 bits (327), Expect = 2e-31
Identities = 65/158 (41%), Positives = 100/158 (63%), Gaps = 4/158 (2%)
Frame = +1
Query: 283 PQIGDW---LKKMLHYNLVGGKHTRGITTVISYKTIEKPEKVTEHTLKMACKLGWCVEMF 453
P+IGD LK++L YN +GGK+ RG+T V++++ + +P K +L+ A +GWCVE+
Sbjct: 36 PEIGDAIARLKEVLEYNAIGGKYNRGLTVVVAFRELVEPRKQDADSLQRAWTVGWCVELL 95
Query: 454 QAYCIVLDDIMDGSSVRRGMPCWYRRPEVGITCAFNDSLLIHSSLFEFLKTNFRTNPNYM 633
QA+ +V DDIMD S RRG CWY++P VG+ A ND+ L+ + ++ LK R P Y+
Sbjct: 96 QAFFLVADDIMDSSLTRRGQTCWYQKPGVGLD-AINDANLLEACIYRLLKLYCREQPYYL 154
Query: 634 KMFELFNETLWRTSMGQHLDHVTGNR-KTDYSSFTLDR 744
+ ELF ++ ++T +GQ LD +T + D FT R
Sbjct: 155 NLIELFLQSSYQTEIGQTLDLLTAPQGNVDLVRFTEKR 192
>D14697-1|BAA03523.2| 420|Homo sapiens KIAA1293 protein.
Length = 420
Score = 135 bits (327), Expect = 2e-31
Identities = 73/208 (35%), Positives = 118/208 (56%), Gaps = 4/208 (1%)
Frame = +1
Query: 133 WPQLIRYKNNSANMTTASKNLEIINEKKMFDDLLPEVIMTLQNKSKLSEVPQIGDW---L 303
W + R +S M + EK+ F +++ L + ++ P+IGD L
Sbjct: 55 WTEEPRALCSSLRMNGDQNSDVYAQEKQDFVQHFSQIVRVL-TEDEMGH-PEIGDAIARL 112
Query: 304 KKMLHYNLVGGKHTRGITTVISYKTIEKPEKVTEHTLKMACKLGWCVEMFQAYCIVLDDI 483
K++L YN +GGK+ RG+T V++++ + +P K +L+ A +GWCVE+ QA+ +V DDI
Sbjct: 113 KEVLEYNAIGGKYNRGLTVVVAFRELVEPRKQDADSLQRAWTVGWCVELLQAFFLVADDI 172
Query: 484 MDGSSVRRGMPCWYRRPEVGITCAFNDSLLIHSSLFEFLKTNFRTNPNYMKMFELFNETL 663
MD S RRG CWY++P VG+ A ND+ L+ + ++ LK R P Y+ + ELF ++
Sbjct: 173 MDSSLTRRGQICWYQKPGVGLD-AINDANLLEACIYRLLKLYCREQPYYLNLIELFLQSS 231
Query: 664 WRTSMGQHLDHVTGNR-KTDYSSFTLDR 744
++T +GQ LD +T + D FT R
Sbjct: 232 YQTEIGQTLDLLTAPQGNVDLVRFTEKR 259
>BC010004-1|AAH10004.1| 419|Homo sapiens farnesyl diphosphate
synthase (farnesyl pyrophosphate synthetase,
dimethylallyl protein.
Length = 419
Score = 135 bits (327), Expect = 2e-31
Identities = 73/208 (35%), Positives = 118/208 (56%), Gaps = 4/208 (1%)
Frame = +1
Query: 133 WPQLIRYKNNSANMTTASKNLEIINEKKMFDDLLPEVIMTLQNKSKLSEVPQIGDW---L 303
W + R +S M + EK+ F +++ L + ++ P+IGD L
Sbjct: 54 WTEEPRALCSSLRMNGDQNSDVYAQEKQDFVQHFSQIVRVL-TEDEMGH-PEIGDAIARL 111
Query: 304 KKMLHYNLVGGKHTRGITTVISYKTIEKPEKVTEHTLKMACKLGWCVEMFQAYCIVLDDI 483
K++L YN +GGK+ RG+T V++++ + +P K +L+ A +GWCVE+ QA+ +V DDI
Sbjct: 112 KEVLEYNAIGGKYNRGLTVVVAFRELVEPRKQDADSLQRAWTVGWCVELLQAFFLVADDI 171
Query: 484 MDGSSVRRGMPCWYRRPEVGITCAFNDSLLIHSSLFEFLKTNFRTNPNYMKMFELFNETL 663
MD S RRG CWY++P VG+ A ND+ L+ + ++ LK R P Y+ + ELF ++
Sbjct: 172 MDSSLTRRGQICWYQKPGVGLD-AINDANLLEACIYRLLKLYCREQPYYLNLIELFLQSS 230
Query: 664 WRTSMGQHLDHVTGNR-KTDYSSFTLDR 744
++T +GQ LD +T + D FT R
Sbjct: 231 YQTEIGQTLDLLTAPQGNVDLVRFTEKR 258
>AL139410-1|CAI12715.1| 419|Homo sapiens farnesyl diphosphate
synthase (farnesyl pyrophosphate synthetase,
dimethylallyl protein.
Length = 419
Score = 135 bits (327), Expect = 2e-31
Identities = 73/208 (35%), Positives = 118/208 (56%), Gaps = 4/208 (1%)
Frame = +1
Query: 133 WPQLIRYKNNSANMTTASKNLEIINEKKMFDDLLPEVIMTLQNKSKLSEVPQIGDW---L 303
W + R +S M + EK+ F +++ L + ++ P+IGD L
Sbjct: 54 WTEEPRALCSSLRMNGDQNSDVYAQEKQDFVQHFSQIVRVL-TEDEMGH-PEIGDAIARL 111
Query: 304 KKMLHYNLVGGKHTRGITTVISYKTIEKPEKVTEHTLKMACKLGWCVEMFQAYCIVLDDI 483
K++L YN +GGK+ RG+T V++++ + +P K +L+ A +GWCVE+ QA+ +V DDI
Sbjct: 112 KEVLEYNAIGGKYNRGLTVVVAFRELVEPRKQDADSLQRAWTVGWCVELLQAFFLVADDI 171
Query: 484 MDGSSVRRGMPCWYRRPEVGITCAFNDSLLIHSSLFEFLKTNFRTNPNYMKMFELFNETL 663
MD S RRG CWY++P VG+ A ND+ L+ + ++ LK R P Y+ + ELF ++
Sbjct: 172 MDSSLTRRGQICWYQKPGVGLD-AINDANLLEACIYRLLKLYCREQPYYLNLIELFLQSS 230
Query: 664 WRTSMGQHLDHVTGNR-KTDYSSFTLDR 744
++T +GQ LD +T + D FT R
Sbjct: 231 YQTEIGQTLDLLTAPQGNVDLVRFTEKR 258
>M29863-1|AAA35820.1| 346|Homo sapiens protein ( Human farnesyl
pyrophosphate synthetase mRNA (hpt807), 3' end. ).
Length = 346
Score = 134 bits (325), Expect = 3e-31
Identities = 65/158 (41%), Positives = 100/158 (63%), Gaps = 4/158 (2%)
Frame = +1
Query: 283 PQIGDW---LKKMLHYNLVGGKHTRGITTVISYKTIEKPEKVTEHTLKMACKLGWCVEMF 453
P+IGD LK++L YN +GGK+ RG+T V++++ + +P K +L+ A +GWCVE+
Sbjct: 29 PEIGDAIARLKEVLEYNAIGGKYNRGLTVVVAFRELVEPRKQDADSLQRAWTVGWCVELL 88
Query: 454 QAYCIVLDDIMDGSSVRRGMPCWYRRPEVGITCAFNDSLLIHSSLFEFLKTNFRTNPNYM 633
QA+ +V DDIMD S RRG CWY++P VG+ A ND+ L+ + ++ LK R P Y+
Sbjct: 89 QAFFLVADDIMDSSLTRRGQICWYQKPGVGLD-AINDANLLEACIYRLLKLYCREQPYYL 147
Query: 634 KMFELFNETLWRTSMGQHLDHVTGNR-KTDYSSFTLDR 744
+ ELF ++ ++T +GQ LD +T + D FT R
Sbjct: 148 NLIELFLQSSYQTEIGQTLDLLTAPQGNVDLVRFTEKR 185
>Z47055-1|CAA87327.1| 348|Homo sapiens farnesyl pyrophosphate
synthetase like-4 protein.
Length = 348
Score = 126 bits (304), Expect = 1e-28
Identities = 62/158 (39%), Positives = 97/158 (61%), Gaps = 4/158 (2%)
Frame = +1
Query: 283 PQIGDW---LKKMLHYNLVGGKHTRGITTVISYKTIEKPEKVTEHTLKMACKLGWCVEMF 453
P+IGD LK++L YN +GGK+ R +T ++++ + P K +L+ A +GWCVE+
Sbjct: 31 PEIGDAIARLKEVLEYNAIGGKYNRRLTVAVAFRELVDPRKQDADSLQRAWTVGWCVELL 90
Query: 454 QAYCIVLDDIMDGSSVRRGMPCWYRRPEVGITCAFNDSLLIHSSLFEFLKTNFRTNPNYM 633
QA+ +V DDIMD S RRG CWY++P VG+ A +D+ L+ + ++ LK R P Y+
Sbjct: 91 QAFFLVADDIMDSSLTRRGQICWYQKPGVGLD-AIDDANLLEACIYPLLKLYCREQPYYL 149
Query: 634 KMFELFNETLWRTSMGQHLDHVTGNR-KTDYSSFTLDR 744
+ ELF ++ ++T +GQ LD +T + D FT R
Sbjct: 150 NLIELFLQSSYQTEIGQTLDLLTXPQGNVDLVRFTEKR 187
>BC050292-1|AAH50292.1| 298|Homo sapiens LOC619190 protein protein.
Length = 298
Score = 109 bits (261), Expect = 2e-23
Identities = 50/143 (34%), Positives = 89/143 (62%), Gaps = 3/143 (2%)
Frame = +1
Query: 283 PQIGDW---LKKMLHYNLVGGKHTRGITTVISYKTIEKPEKVTEHTLKMACKLGWCVEMF 453
P+ GD LK++L YN +GGK+ RG+ +++++ + +P K+ +L+ A +GW ++
Sbjct: 4 PETGDATARLKEVLEYNAIGGKYHRGLMVLVAFRELVEPRKLDADSLQWAPTVGWYAQLL 63
Query: 454 QAYCIVLDDIMDGSSVRRGMPCWYRRPEVGITCAFNDSLLIHSSLFEFLKTNFRTNPNYM 633
QA+ +V DDIMD S +G WY++ +G+ A ND++L+ + ++ LK R P Y+
Sbjct: 64 QAFFLVADDIMDSSLTCQGQISWYQKLGMGLD-AINDAILLEACIYCLLKLYCREQPYYL 122
Query: 634 KMFELFNETLWRTSMGQHLDHVT 702
+ ELF + ++T +GQ LD +T
Sbjct: 123 NLMELFQQNSYQTEIGQTLDLIT 145
>AL139333-5|CAI15284.1| 2369|Homo sapiens dopey family member 1
protein.
Length = 2369
Score = 37.5 bits (83), Expect = 0.061
Identities = 28/82 (34%), Positives = 40/82 (48%), Gaps = 4/82 (4%)
Frame = +1
Query: 148 RYKNNSANMTTASKNLEIINEKKMFDDLLPEVIMTLQNKSKLSEVPQ---IGDWLKKMLH 318
+Y+N A + A KN E +E L ++ LQN +K VP+ IG L + LH
Sbjct: 13 KYRNYVAAIDKALKNFEYSSEWADLISALGKLNKVLQNNAKYQVVPKKLTIGKRLAQCLH 72
Query: 319 YNLVGGKHTRGITTV-ISYKTI 381
L GG H + + T I +K I
Sbjct: 73 PALPGGVHRKALETYEIIFKII 94
>AL139333-4|CAM21599.1| 2465|Homo sapiens dopey family member 1
protein.
Length = 2465
Score = 37.5 bits (83), Expect = 0.061
Identities = 28/82 (34%), Positives = 40/82 (48%), Gaps = 4/82 (4%)
Frame = +1
Query: 148 RYKNNSANMTTASKNLEIINEKKMFDDLLPEVIMTLQNKSKLSEVPQ---IGDWLKKMLH 318
+Y+N A + A KN E +E L ++ LQN +K VP+ IG L + LH
Sbjct: 13 KYRNYVAAIDKALKNFEYSSEWADLISALGKLNKVLQNNAKYQVVPKKLTIGKRLAQCLH 72
Query: 319 YNLVGGKHTRGITTV-ISYKTI 381
L GG H + + T I +K I
Sbjct: 73 PALPGGVHRKALETYEIIFKII 94
>AL121716-2|CAI42426.1| 2369|Homo sapiens dopey family member 1
protein.
Length = 2369
Score = 37.5 bits (83), Expect = 0.061
Identities = 28/82 (34%), Positives = 40/82 (48%), Gaps = 4/82 (4%)
Frame = +1
Query: 148 RYKNNSANMTTASKNLEIINEKKMFDDLLPEVIMTLQNKSKLSEVPQ---IGDWLKKMLH 318
+Y+N A + A KN E +E L ++ LQN +K VP+ IG L + LH
Sbjct: 13 KYRNYVAAIDKALKNFEYSSEWADLISALGKLNKVLQNNAKYQVVPKKLTIGKRLAQCLH 72
Query: 319 YNLVGGKHTRGITTV-ISYKTI 381
L GG H + + T I +K I
Sbjct: 73 PALPGGVHRKALETYEIIFKII 94
>AL121716-1|CAI42425.2| 2465|Homo sapiens dopey family member 1
protein.
Length = 2465
Score = 37.5 bits (83), Expect = 0.061
Identities = 28/82 (34%), Positives = 40/82 (48%), Gaps = 4/82 (4%)
Frame = +1
Query: 148 RYKNNSANMTTASKNLEIINEKKMFDDLLPEVIMTLQNKSKLSEVPQ---IGDWLKKMLH 318
+Y+N A + A KN E +E L ++ LQN +K VP+ IG L + LH
Sbjct: 13 KYRNYVAAIDKALKNFEYSSEWADLISALGKLNKVLQNNAKYQVVPKKLTIGKRLAQCLH 72
Query: 319 YNLVGGKHTRGITTV-ISYKTI 381
L GG H + + T I +K I
Sbjct: 73 PALPGGVHRKALETYEIIFKII 94
>BC071603-1|AAH71603.1| 691|Homo sapiens zinc finger protein 770
protein.
Length = 691
Score = 30.3 bits (65), Expect = 9.3
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = -2
Query: 462 ICLKHFDTPSQLTSHF 415
IC KHF+TPS+L H+
Sbjct: 31 ICFKHFETPSKLARHY 46
>AK000589-1|BAA91274.1| 186|Homo sapiens protein ( Homo sapiens
cDNA FLJ20582 fis, clone KAT12156. ).
Length = 186
Score = 30.3 bits (65), Expect = 9.3
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = -2
Query: 462 ICLKHFDTPSQLTSHF 415
IC KHF+TPS+L H+
Sbjct: 31 ICFKHFETPSKLARHY 46
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,169,473
Number of Sequences: 237096
Number of extensions: 2532436
Number of successful extensions: 4992
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 4763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4985
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10816958492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -