Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P30_F_C11
         (853 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    32   0.006
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   4.7  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    22   8.2  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    22   8.2  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    22   8.2  

>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 32.3 bits (70), Expect = 0.006
 Identities = 16/57 (28%), Positives = 25/57 (43%)
 Frame = +1

Query: 298 WLKKMLHYNLVGGKHTRGITTVISYKTIEKPEKVTEHTLKMACKLGWCVEMFQAYCI 468
           W+   +H      +   GITTV++  TI    +     ++ A  L W + M   YCI
Sbjct: 263 WVSFWIHREATSDRVGLGITTVLTLSTISLDSRTDLPKVRYATALDWFLLMSFGYCI 319


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -3

Query: 602 FRNSNKELCIKRESLKAHVMPTSG 531
           FR+ +KELC  +  L   + PT G
Sbjct: 485 FRDMHKELCDGKPGLCDAMKPTKG 508


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 11/48 (22%), Positives = 22/48 (45%)
 Frame = -2

Query: 423 SHFQSMFGDFFRFFNCFV*NHSSYSSCMFTANQIVMKHLFQPIPYLGH 280
           SHF  +FG+ F     F    S+ ++ +      V +++    P++ H
Sbjct: 116 SHFPYVFGEAFCIIQSFAAETSANATVLTITAFTVERYIAICHPFISH 163


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 15/53 (28%), Positives = 24/53 (45%)
 Frame = +1

Query: 586 LFEFLKTNFRTNPNYMKMFELFNETLWRTSMGQHLDHVTGNRKTDYSSFTLDR 744
           LF FL+T  +  P Y     +  E+L     G+H   +     + Y+  TL+R
Sbjct: 25  LFSFLRTRTKLQPTYFHHTYIIYESL----CGRHEKRLLNELLSSYN--TLER 71


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 15/53 (28%), Positives = 24/53 (45%)
 Frame = +1

Query: 586 LFEFLKTNFRTNPNYMKMFELFNETLWRTSMGQHLDHVTGNRKTDYSSFTLDR 744
           LF FL+T  +  P Y     +  E+L     G+H   +     + Y+  TL+R
Sbjct: 25  LFSFLRTRTKLQPTYFHHTYIIYESL----CGRHEKRLLNELLSSYN--TLER 71


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 243,065
Number of Sequences: 438
Number of extensions: 5726
Number of successful extensions: 17
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27431202
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)