Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P30_F_C10
(602 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC9E9.13 |wos2||p23 homolog |Schizosaccharomyces pombe|chr 1||... 54 1e-08
SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|... 27 1.6
SPCC757.05c |||acetylornithine deacetylase |Schizosaccharomyces ... 27 1.6
SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual 27 1.6
SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces... 27 2.8
SPBC776.06c |||spindle pole body interacting protein |Schizosacc... 27 2.8
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 26 4.9
SPBC36.12c |git7||SGT1-like protein Git7|Schizosaccharomyces pom... 26 4.9
SPBC3B9.03 |||signal recognition particle receptor alpha subunit... 26 4.9
SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subuni... 25 6.4
SPBC609.04 |caf5||spermine family transmembrane transporter Caf5... 25 6.4
SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|ch... 25 6.4
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch... 25 8.5
SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom... 25 8.5
>SPAC9E9.13 |wos2||p23 homolog |Schizosaccharomyces pombe|chr
1|||Manual
Length = 186
Score = 54.4 bits (125), Expect = 1e-08
Identities = 28/96 (29%), Positives = 50/96 (52%), Gaps = 1/96 (1%)
Frame = +3
Query: 84 KEDVFLTFSV-ETKDPTIKIEKDSVYFRGEGAPDNRLHEVTIALYDTVLPEKSVFVNKGR 260
K ++LT + + DP I + + + + N + V I + + EKS + GR
Sbjct: 23 KNVIYLTVLIPDAVDPKINLTPEKLVIDSKSGA-NAHYAVQIDFFKDIDVEKSKYSVTGR 81
Query: 261 CVEMILRKEKTDGPFWPTLTKDKKKPHYLKIDFNKW 368
+ +L K++ FWP LTK+K + H+L+ DF++W
Sbjct: 82 YIFFVLYKKELQEEFWPRLTKEKLRLHWLRTDFDRW 117
>SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 822
Score = 27.5 bits (58), Expect = 1.6
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -1
Query: 110 TKCKKNIFLSLCPIILAVELKFR*TLYF 27
+KCK+N FL L ++ AV + R LYF
Sbjct: 9 SKCKRNTFLQLAMVLFAVVMA-RIALYF 35
>SPCC757.05c |||acetylornithine deacetylase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 400
Score = 27.5 bits (58), Expect = 1.6
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Frame = +3
Query: 66 YYGAQRKEDVFLTFSVETKDPTIK--IEKDSVYFRG 167
Y G+QR V LT ++T +P + IE D ++ RG
Sbjct: 114 YLGSQRNTKVVLTSHIDTVNPFLPYYIEGDKIHGRG 149
>SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual
Length = 426
Score = 27.5 bits (58), Expect = 1.6
Identities = 17/50 (34%), Positives = 26/50 (52%)
Frame = -2
Query: 295 SVFSFRNIISTHLPLFTKTLFSGRTVSYSAIVTSCSLLSGAPSPLKYTES 146
S+F F I L L TK++FS + ++ ++ C SG + YTES
Sbjct: 140 SIF-FHAIACYALYLLTKSIFSNQKMTAYTVIFYCFSPSGIYMSVGYTES 188
>SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 745
Score = 26.6 bits (56), Expect = 2.8
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -2
Query: 169 SPLKYTESFSILIVGSLVSTLNVRKTSSFR 80
SPLKYT S S +G + +L KT + +
Sbjct: 516 SPLKYTHSASKSFIGEVQDSLQALKTKAHK 545
>SPBC776.06c |||spindle pole body interacting protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 598
Score = 26.6 bits (56), Expect = 2.8
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 4/44 (9%)
Frame = -2
Query: 277 NIISTHLPLFTKTLFSGRTVSYSA----IVTSCSLLSGAPSPLK 158
N++ T L + K LF +T S S +++SC+L+SGA L+
Sbjct: 274 NVLITALLISKKVLFLTKTSSASVLADFVLSSCALVSGATGLLQ 317
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 25.8 bits (54), Expect = 4.9
Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 2/74 (2%)
Frame = -2
Query: 298 PSVFSFRNIISTHLPLFTKTLFSGRTVSYSA--IVTSCSLLSGAPSPLKYTESFSILIVG 125
PS F+ I S+ L +T S S+ + + S SG+ S YT + S
Sbjct: 699 PSTFTTSFITSSSLSSIPNNSTEVKTASTSSGTEIKTASTSSGSSSSSSYTPASSTSTTT 758
Query: 124 SLVSTLNVRKTSSF 83
S VS+ +SSF
Sbjct: 759 SSVSSRQSSSSSSF 772
>SPBC36.12c |git7||SGT1-like protein Git7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.8 bits (54), Expect = 4.9
Identities = 20/71 (28%), Positives = 34/71 (47%)
Frame = +3
Query: 111 VETKDPTIKIEKDSVYFRGEGAPDNRLHEVTIALYDTVLPEKSVFVNKGRCVEMILRKEK 290
V+ +D ++ +EK+++ + + V LY+ ++PEKS F VE+ L K K
Sbjct: 204 VKDEDVSLLMEKNTLKIEIKLEDGSIFSLVLDPLYEEIVPEKSSFKLFSSKVEITLIK-K 262
Query: 291 TDGPFWPTLTK 323
W L K
Sbjct: 263 VSEIKWEALVK 273
>SPBC3B9.03 |||signal recognition particle receptor alpha subunit
Srp101|Schizosaccharomyces pombe|chr 2|||Manual
Length = 547
Score = 25.8 bits (54), Expect = 4.9
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = +1
Query: 295 MVHSGRR*QKTRKSRIT*KLISTNGMMRMMKLKKIIHMISSKCSRTLV 438
++HS R +K T LI NG+ + L KI + + S R LV
Sbjct: 328 LLHSIRSVRKNENRPYTISLIGVNGVGKSTTLAKIAYWLLSNNFRILV 375
>SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subunit
Apc5 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 737
Score = 25.4 bits (53), Expect = 6.4
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -2
Query: 160 KYTESFSILIVGSLVSTLNVRKTSSFRCAP*YWR 59
+Y E L V +++ST V+ SF+CA Y R
Sbjct: 469 RYAELGRWLDVATILSTAEVQSQRSFQCAHLYGR 502
>SPBC609.04 |caf5||spermine family transmembrane transporter
Caf5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 531
Score = 25.4 bits (53), Expect = 6.4
Identities = 9/34 (26%), Positives = 19/34 (55%)
Frame = -2
Query: 283 FRNIISTHLPLFTKTLFSGRTVSYSAIVTSCSLL 182
FR+ ++ PLF + +F+ SY+ + ++L
Sbjct: 469 FRSAMAASFPLFARAMFNNTGPSYAPVAWGSTIL 502
>SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|chr
3|||Manual
Length = 667
Score = 25.4 bits (53), Expect = 6.4
Identities = 17/60 (28%), Positives = 30/60 (50%)
Frame = -2
Query: 307 QNGPSVFSFRNIISTHLPLFTKTLFSGRTVSYSAIVTSCSLLSGAPSPLKYTESFSILIV 128
Q + S R +IS +LF G + + T C+++SGA + + T + S+LI+
Sbjct: 357 QTNNLIRSNRELISLGAANIGSSLFCGLPICGGYLRTKCNIMSGARTQVA-TIACSVLIL 415
>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1318
Score = 25.0 bits (52), Expect = 8.5
Identities = 23/76 (30%), Positives = 30/76 (39%), Gaps = 3/76 (3%)
Frame = -2
Query: 337 GFFLSFVSVGQNGPSVFSFRNIISTHLPLFTKTLFSGRTVSYSAIVTSCSLL---SGAPS 167
G L+ + Q G FSF N + L TL + +T CSLL S P
Sbjct: 196 GSILALLCKTQKGDPYFSFLNAVLMKCVLTQHTLDVLLLTKKDSSMTLCSLLNAISFEPI 255
Query: 166 PLKYTESFSILIVGSL 119
LK F I+ S+
Sbjct: 256 NLKAIPLFFIICADSI 271
>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1158
Score = 25.0 bits (52), Expect = 8.5
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = -1
Query: 140 YFDRRIFSFHTKCKKNIFLSLCPIILAVELKFR 42
Y RR+ + KK F++L +ILA ++K +
Sbjct: 1002 YLYRRLMDEESSVKKTCFMTLAFLILAGQIKVK 1034
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,397,830
Number of Sequences: 5004
Number of extensions: 47593
Number of successful extensions: 138
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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