Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P30_F_C10
         (602 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33072| Best HMM Match : Arm (HMM E-Value=0.00043)                   40   0.002
SB_57840| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.008
SB_13289| Best HMM Match : DUF543 (HMM E-Value=10)                     29   2.2  
SB_242| Best HMM Match : AFP (HMM E-Value=0.45)                        29   2.9  
SB_24668| Best HMM Match : RVT_1 (HMM E-Value=0.4)                     29   3.8  
SB_16169| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_5478| Best HMM Match : NDT80_PhoG (HMM E-Value=3.6e-21)             29   3.8  
SB_284| Best HMM Match : rve (HMM E-Value=0.001)                       29   3.8  
SB_57394| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.1  
SB_24336| Best HMM Match : PqiA (HMM E-Value=1.5)                      28   5.1  
SB_11124| Best HMM Match : Nuclear_move (HMM E-Value=1.54143e-44)      28   5.1  
SB_35900| Best HMM Match : EGF_CA (HMM E-Value=2.5e-38)                27   8.8  
SB_50619| Best HMM Match : RnaseH (HMM E-Value=0.89)                   27   8.8  
SB_8084| Best HMM Match : EGF_CA (HMM E-Value=2.8026e-45)              27   8.8  
SB_2198| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.8  
SB_235| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=3.9e-15)          27   8.8  

>SB_33072| Best HMM Match : Arm (HMM E-Value=0.00043)
          Length = 701

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 19/47 (40%), Positives = 29/47 (61%)
 Frame = +3

Query: 228 PEKSVFVNKGRCVEMILRKEKTDGPFWPTLTKDKKKPHYLKIDFNKW 368
           P++ V   KG  + ++LRK + D   WP L K K+K  Y+ IDF++W
Sbjct: 595 PQECVVDVKGSEILVLLRKARGDE--WPRLLKSKEKYPYISIDFDRW 639


>SB_57840| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 118

 Score = 37.5 bits (83), Expect = 0.008
 Identities = 15/37 (40%), Positives = 24/37 (64%)
 Frame = +3

Query: 258 RCVEMILRKEKTDGPFWPTLTKDKKKPHYLKIDFNKW 368
           R VE  + K+K    FW  L   +K+P++LKI+F++W
Sbjct: 37  RYVEFSIAKQKGREFFWQRLVDSEKRPNWLKINFDRW 73


>SB_13289| Best HMM Match : DUF543 (HMM E-Value=10)
          Length = 319

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
 Frame = -3

Query: 516 VNSHHQSQFPSHQTKVFLPSAQDHQLHQSSGAFARNHM-NYFLQLHHPHHSIC*NQFSGN 340
           +N HHQS   +HQ+        +H  HQSS     +H  +  +  HH   +I  N    +
Sbjct: 245 INHHHQSSIINHQSSSSSSIIINH--HQSSSIIINHHQSSSIINNHHQSSTIIINHHQSS 302

Query: 339 A 337
           +
Sbjct: 303 S 303


>SB_242| Best HMM Match : AFP (HMM E-Value=0.45)
          Length = 147

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 19/62 (30%), Positives = 27/62 (43%)
 Frame = -2

Query: 250 FTKTLFSGRTVSYSAIVTSCSLLSGAPSPLKYTESFSILIVGSLVSTLNVRKTSSFRCAP 71
           +T T     T SY+   TS +  +   S   YT + S     S  ST +   T+S+R  P
Sbjct: 32  YTSTTSYTSTTSYTP-TTSYTCTTSYTSTTSYTSTTSYTSTTSYTSTTSYTSTTSYRSTP 90

Query: 70  *Y 65
            Y
Sbjct: 91  SY 92


>SB_24668| Best HMM Match : RVT_1 (HMM E-Value=0.4)
          Length = 523

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +3

Query: 99  LTFSVETKDPTIKIEKDSVYFRGEGAPDNRLH-EVTIALYDTVLPEKSV 242
           L+ S  T DP  +       F+GEG PD +LH E+   +   +LP + V
Sbjct: 160 LSDSSPTSDPVSEFPD---VFKGEGKPDQKLHLELDATVPPVILPVRKV 205


>SB_16169| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 646

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = -3

Query: 510 SHHQSQFPSHQTKVFL-PSAQDHQLHQSSGAFARNHMNYFLQL 385
           +HHQ +  +H   + L P  Q +  H    AFA NH+N  L L
Sbjct: 163 NHHQREEHAHLHHLILNPVFQQYSKHFLKEAFALNHLNRKLTL 205


>SB_5478| Best HMM Match : NDT80_PhoG (HMM E-Value=3.6e-21)
          Length = 781

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 16/61 (26%), Positives = 29/61 (47%)
 Frame = +3

Query: 123 DPTIKIEKDSVYFRGEGAPDNRLHEVTIALYDTVLPEKSVFVNKGRCVEMILRKEKTDGP 302
           DP ++   +++  +G+  PD R   + +A+Y  V  E   F+  G   E I+ +    G 
Sbjct: 195 DPPVETTSNNMRKKGKPNPDQRYFNLVVAIYAYV--EHESFLICGSASERIIVRASNPGQ 252

Query: 303 F 305
           F
Sbjct: 253 F 253


>SB_284| Best HMM Match : rve (HMM E-Value=0.001)
          Length = 1201

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +3

Query: 99  LTFSVETKDPTIKIEKDSVYFRGEGAPDNRLH-EVTIALYDTVLPEKSV 242
           L+ S  T DP  +       F+GEG PD +LH E+   +   +LP + V
Sbjct: 417 LSDSSPTSDPVSEFPD---VFKGEGKPDQKLHLELDATVPPVILPVRKV 462


>SB_57394| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 442

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = -3

Query: 318 LASARMDHL-FFPSVISSPHICPYLQKHSFPEEQCRTVLSL 199
           LA+ R D     PS I+SP+  P  Q   FP    R+ +SL
Sbjct: 164 LANERNDQRSLIPSAITSPYYAPRAQATGFPNNVQRSQISL 204


>SB_24336| Best HMM Match : PqiA (HMM E-Value=1.5)
          Length = 260

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 15/48 (31%), Positives = 21/48 (43%)
 Frame = -3

Query: 507 HHQSQFPSHQTKVFLPSAQDHQLHQSSGAFARNHMNYFLQLHHPHHSI 364
           HHQ Q+  +   V   S Q H   Q       +H   ++Q H  H+SI
Sbjct: 72  HHQLQYSVYS--VSSASLQHHHQRQRHRHHQHHHQLQYIQCHQHHYSI 117


>SB_11124| Best HMM Match : Nuclear_move (HMM E-Value=1.54143e-44)
          Length = 376

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 7/88 (7%)
 Frame = +3

Query: 114 ETKDPTIKIEKDS--VYFRGEGAPDNRLHEVTIA----LYDTVLPEKSVF-VNKGRCVEM 272
           + +D  ++I+  S  V+ +G   PD+     TI     L   V  E+ ++ +  G+CV +
Sbjct: 110 KARDVGVEIKNSSLKVFLKGSVPPDDLKKGSTILVDGQLQRHVKCEECMWSLEPGKCVAI 169

Query: 273 ILRKEKTDGPFWPTLTKDKKKPHYLKID 356
            L  EKT+  FW T+ K   +    KID
Sbjct: 170 NL--EKTEERFWTTVIKGDPEIDRTKID 195


>SB_35900| Best HMM Match : EGF_CA (HMM E-Value=2.5e-38)
          Length = 839

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
 Frame = +3

Query: 171 GAPDNRLH-EVTIALYDTVLPEKSVFVNKGRCVEMILRKEKTDGP 302
           GAPD  L  E T+AL  T+ PE +V        E  +  E T  P
Sbjct: 410 GAPDTTLAPETTVALESTMTPESTVPPETTVATETTVAPETTAAP 454


>SB_50619| Best HMM Match : RnaseH (HMM E-Value=0.89)
          Length = 724

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 20/67 (29%), Positives = 31/67 (46%)
 Frame = -3

Query: 381 HPHHSIC*NQFSGNAAFSCLLLASARMDHLFFPSVISSPHICPYLQKHSFPEEQCRTVLS 202
           +P  S+C +QFS NA     +L S R   +FF  +++    C     H +   QC  +  
Sbjct: 551 YPEISMC-SQFSSNAR----MLFSRRARIVFFDVLVADLSQCFAHGSHDWKPVQCWLIKM 605

Query: 201 LPHVVYY 181
           + H V Y
Sbjct: 606 VKHNVCY 612


>SB_8084| Best HMM Match : EGF_CA (HMM E-Value=2.8026e-45)
          Length = 3094

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
 Frame = +3

Query: 171  GAPDNRLH-EVTIALYDTVLPEKSVFVNKGRCVEMILRKEKTDGP 302
            GAPD  L  E T+AL  T+ PE +V        E  +  E T  P
Sbjct: 2106 GAPDTTLAPETTVALESTMTPESTVPPETTVATETTVAPETTAAP 2150


>SB_2198| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 962

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +3

Query: 69  YGAQRKEDVFLTFSVETKDPTIKIEKDSVYFRGEGAP 179
           YGA++  DV  TFS +       ++ D +  RG+G P
Sbjct: 483 YGAKKPLDVKRTFSCKANFRGNTVDADFITIRGKGIP 519


>SB_235| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=3.9e-15)
          Length = 544

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = +2

Query: 434 WWSWWSWA 457
           WW+WW WA
Sbjct: 246 WWTWWIWA 253


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,583,407
Number of Sequences: 59808
Number of extensions: 345595
Number of successful extensions: 982
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 885
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 981
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1463691625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)