Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P30_F_C09
         (326 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17G9.07 |rps2402|rps24-2|40S ribosomal protein S24|Schizosac...    68   4e-13
SPAC17G6.06 |rps2401|rps24-1, rps24|40S ribosomal protein S24|Sc...    66   1e-12
SPCC417.06c |ppk35|mug27|serine/threonine protein kinase Ppk35|S...    28   0.41 
SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces p...    25   3.8  
SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces pomb...    25   3.8  
SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit Rpt2|Schi...    25   3.8  
SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyc...    23   8.8  
SPAC688.12c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    23   8.8  
SPAC3C7.06c |pit1||serine/threonine protein kinase Pit1|Schizosa...    23   8.8  

>SPBC17G9.07 |rps2402|rps24-2|40S ribosomal protein
           S24|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 134

 Score = 67.7 bits (158), Expect = 4e-13
 Identities = 34/56 (60%), Positives = 42/56 (75%), Gaps = 1/56 (1%)
 Frame = +2

Query: 35  GGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEK-KRPTRKQRKERKNRMKKVRGT 199
           GG+STGFALIYD+ +  KKFEP +RL R G  E  ++  R+QRK+RKNR KKV GT
Sbjct: 66  GGRSTGFALIYDSTESMKKFEPHYRLVRVGQAEPIQKVARQQRKQRKNRGKKVFGT 121


>SPAC17G6.06 |rps2401|rps24-1, rps24|40S ribosomal protein
           S24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 134

 Score = 66.5 bits (155), Expect = 1e-12
 Identities = 33/56 (58%), Positives = 42/56 (75%), Gaps = 1/56 (1%)
 Frame = +2

Query: 35  GGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEK-KRPTRKQRKERKNRMKKVRGT 199
           GG++TGFALIYD ++  KKFEP +RL R G  E  ++  R+QRK+RKNR KKV GT
Sbjct: 66  GGRTTGFALIYDDVEAMKKFEPHYRLVRVGHAEPIQKVARQQRKQRKNRGKKVFGT 121


>SPCC417.06c |ppk35|mug27|serine/threonine protein kinase
           Ppk35|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 624

 Score = 27.9 bits (59), Expect = 0.41
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +2

Query: 89  KFEPKHRLARHGLYEKKRPTRKQRKERKNRMKK 187
           K+ P  R    G + +KR  RK++ E+KN   K
Sbjct: 539 KYRPNARKPLVGRHREKRQLRKEKPEKKNNSTK 571


>SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 202

 Score = 24.6 bits (51), Expect = 3.8
 Identities = 9/35 (25%), Positives = 21/35 (60%)
 Frame = +2

Query: 83  AKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKK 187
           +KK + +    +     +K   +K++KE+K+++KK
Sbjct: 125 SKKVKVRKTSGKESSKREKSKKKKEKKEKKDKLKK 159


>SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 440

 Score = 24.6 bits (51), Expect = 3.8
 Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 5/39 (12%)
 Frame = +2

Query: 89  KFEPKHRLARHGLYEKKRPT-----RKQRKERKNRMKKV 190
           +F  KH L RHG  EKKR       R+Q   +  R KKV
Sbjct: 58  EFGTKH-LRRHGRIEKKRRNWKGLFRRQSNWKDGRCKKV 95


>SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit
           Rpt2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 448

 Score = 24.6 bits (51), Expect = 3.8
 Identities = 8/23 (34%), Positives = 17/23 (73%)
 Frame = +2

Query: 131 EKKRPTRKQRKERKNRMKKVRGT 199
           E+ +P  ++ +E +NR+ ++RGT
Sbjct: 90  ERLKPQDERTQEERNRVDEIRGT 112


>SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 682

 Score = 23.4 bits (48), Expect = 8.8
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = +2

Query: 128 YEKKRPTRKQRKERKNRMKKVR 193
           Y++K   RKQR++   ++KK +
Sbjct: 478 YKRKAAERKQRRKELRQLKKTK 499


>SPAC688.12c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 167

 Score = 23.4 bits (48), Expect = 8.8
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +2

Query: 77  DLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKK 187
           D A   E K RL      EKK   ++Q+KE+K   +K
Sbjct: 129 DEALLAERKQRLKEQR--EKKEQKKEQKKEKKTERRK 163


>SPAC3C7.06c |pit1||serine/threonine protein kinase
           Pit1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 650

 Score = 23.4 bits (48), Expect = 8.8
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +2

Query: 140 RPTRKQRKERKNRMKK 187
           +P RK RK+ KNR  K
Sbjct: 402 KPFRKSRKQSKNRKNK 417


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,115,137
Number of Sequences: 5004
Number of extensions: 19926
Number of successful extensions: 73
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 89857768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)