Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P30_F_C09
(326 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0153 - 7258002-7258034,7258137-7258223,7258991-7259161,725... 83 5e-17
01_06_0550 - 30151494-30151526,30151620-30151706,30152458-301526... 83 5e-17
06_03_0440 + 20815528-20815653,20815742-20815912,20816501-208165... 51 3e-12
01_01_0502 - 3688940-3689149,3689180-3689251,3690028-3690064,369... 30 0.49
01_05_0740 - 24809951-24810394,24810622-24810700,24811651-248118... 27 2.6
11_04_0350 - 16658497-16659015 27 4.6
01_06_0733 - 31563246-31563462,31563721-31563947,31563983-315640... 26 6.1
12_01_0407 - 3219980-3221278 26 8.0
09_02_0157 + 5083771-5083996,5084007-5084326,5085958-5086392,508... 26 8.0
05_05_0006 + 21450739-21451434 26 8.0
04_04_1214 - 31798271-31799134,31799218-31799301,31799469-317996... 26 8.0
>02_02_0153 -
7258002-7258034,7258137-7258223,7258991-7259161,
7259261-7259386
Length = 138
Score = 83.0 bits (196), Expect = 5e-17
Identities = 38/54 (70%), Positives = 43/54 (79%)
Frame = +2
Query: 35 GGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVRG 196
GGKSTGF LIYD LD AKK+EPK+RL R+GL K +RKQ KERKNR KK+RG
Sbjct: 72 GGKSTGFGLIYDNLDAAKKYEPKYRLIRNGLATKVEKSRKQMKERKNRAKKIRG 125
>01_06_0550 -
30151494-30151526,30151620-30151706,30152458-30152628,
30152716-30152757,30152856-30152939
Length = 138
Score = 83.0 bits (196), Expect = 5e-17
Identities = 38/54 (70%), Positives = 43/54 (79%)
Frame = +2
Query: 35 GGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVRG 196
GGKSTGF LIYD LD AKK+EPK+RL R+GL K +RKQ KERKNR KK+RG
Sbjct: 72 GGKSTGFGLIYDNLDAAKKYEPKYRLIRNGLATKVEKSRKQMKERKNRAKKIRG 125
>06_03_0440 +
20815528-20815653,20815742-20815912,20816501-20816584,
20818831-20818917,20819044-20819076
Length = 166
Score = 51.2 bits (117), Expect(2) = 3e-12
Identities = 22/28 (78%), Positives = 24/28 (85%)
Frame = +2
Query: 35 GGKSTGFALIYDTLDLAKKFEPKHRLAR 118
GGKSTGF LIYD LD AKK+EPK+RL R
Sbjct: 72 GGKSTGFGLIYDNLDAAKKYEPKYRLIR 99
Score = 35.9 bits (79), Expect(2) = 3e-12
Identities = 16/26 (61%), Positives = 19/26 (73%)
Frame = +2
Query: 119 HGLYEKKRPTRKQRKERKNRMKKVRG 196
+GL K +RKQ KERKNR KK+RG
Sbjct: 128 NGLATKVEKSRKQMKERKNRAKKIRG 153
>01_01_0502 -
3688940-3689149,3689180-3689251,3690028-3690064,
3691224-3691705
Length = 266
Score = 29.9 bits (64), Expect = 0.49
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +1
Query: 49 WIRFDLRHTRSGQEVRAQAQVSPPRPVREEEAHA 150
W R +R + G E AQ+ PPRPV + +HA
Sbjct: 155 WSRL-VRTSEHGDEQLTGAQLRPPRPVEADASHA 187
>01_05_0740 - 24809951-24810394,24810622-24810700,24811651-24811809,
24812083-24812246,24812436-24812624,24813151-24813408,
24813463-24813951,24814062-24814262,24814368-24814639,
24814661-24814685,24814776-24814937,24815065-24815104,
24815244-24815353,24815812-24815898,24816013-24816507
Length = 1057
Score = 27.5 bits (58), Expect = 2.6
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +2
Query: 122 GLYEKKRPTRKQRKERKNRMKK 187
G+YE++R R+Q KER+ + K
Sbjct: 999 GVYERERNMRQQEKERRKQQSK 1020
>11_04_0350 - 16658497-16659015
Length = 172
Score = 26.6 bits (56), Expect = 4.6
Identities = 10/23 (43%), Positives = 18/23 (78%)
Frame = +2
Query: 131 EKKRPTRKQRKERKNRMKKVRGT 199
+KK+ +K++K++K + KKVR T
Sbjct: 36 KKKKKKKKKKKKKKKKKKKVRYT 58
>01_06_0733 -
31563246-31563462,31563721-31563947,31563983-31564018,
31564750-31564862,31565872-31565950,31566739-31566956,
31567041-31567146,31568518-31568730
Length = 402
Score = 26.2 bits (55), Expect = 6.1
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = +1
Query: 70 HTRSGQEVRAQAQVSPPRPVREEEAHAQTA*RT 168
H RSG++ R + ++SP P R+ + R+
Sbjct: 190 HQRSGEDFRQEHEISPVAPHRDVRVYVDNVVRS 222
>12_01_0407 - 3219980-3221278
Length = 432
Score = 25.8 bits (54), Expect = 8.0
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = -1
Query: 143 ASSSRTGRGGLTCAWARTSWPDRVCR 66
A+ S++G+G AW R W D + +
Sbjct: 90 ATDSQSGKGKKGAAWQRMKWTDSMVK 115
>09_02_0157 +
5083771-5083996,5084007-5084326,5085958-5086392,
5087277-5087921
Length = 541
Score = 25.8 bits (54), Expect = 8.0
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -3
Query: 210 LDFLVPRTFFILFLRSLRCLRVGLFFSYRPW 118
++FL+ LFL +L +R G+FF + W
Sbjct: 461 VNFLMTTAVAQLFLATLCRMRAGIFFFFAAW 491
>05_05_0006 + 21450739-21451434
Length = 231
Score = 25.8 bits (54), Expect = 8.0
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = -1
Query: 188 PSSFCSYVLYAVCAWASSSRTGRGGLTCAWARTSW 84
PSS S A A+ S+S TG T ++ SW
Sbjct: 69 PSSSASTTTTAAAAFTSTSTTGASATTVDSSKESW 103
>04_04_1214 -
31798271-31799134,31799218-31799301,31799469-31799614,
31799658-31799739
Length = 391
Score = 25.8 bits (54), Expect = 8.0
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +2
Query: 50 GFALIYDTLDLAKKFEPKHRL 112
GF L D L+ AK F+ KH+L
Sbjct: 129 GFVLGKDALERAKSFDEKHQL 149
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,707,177
Number of Sequences: 37544
Number of extensions: 142978
Number of successful extensions: 446
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 442
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 435246480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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