Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P30_F_C09
         (326 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18070| Best HMM Match : V-ATPase_G (HMM E-Value=4)                  29   0.89 
SB_44985| Best HMM Match : YhjQ (HMM E-Value=0.37)                     29   0.89 
SB_6351| Best HMM Match : IncA (HMM E-Value=0.13)                      29   0.89 
SB_16395| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.1  
SB_899| Best HMM Match : Alpha_L_fucos (HMM E-Value=0)                 27   3.6  
SB_22216| Best HMM Match : PGAMP (HMM E-Value=4)                       27   4.8  
SB_54309| Best HMM Match : SH2 (HMM E-Value=5.1e-17)                   27   4.8  
SB_42837| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.8  
SB_59269| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.3  
SB_36647| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.3  
SB_6719| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   8.3  

>SB_18070| Best HMM Match : V-ATPase_G (HMM E-Value=4)
          Length = 166

 Score = 29.1 bits (62), Expect = 0.89
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +2

Query: 101 KHRLARHGLYEKKRPTRKQRKERKNRMKKVR 193
           +H LA H   +++RP+   R+  K R++K+R
Sbjct: 79  RHGLASHDKKKRERPSLVARERMKKRLRKIR 109


>SB_44985| Best HMM Match : YhjQ (HMM E-Value=0.37)
          Length = 1376

 Score = 29.1 bits (62), Expect = 0.89
 Identities = 17/39 (43%), Positives = 21/39 (53%)
 Frame = +2

Query: 74   LDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKV 190
            LDL      KHR  RH   EKK    K RK +KN M+++
Sbjct: 1000 LDLLLAHATKHRGRRHRS-EKKEKANKARKCQKNYMRRL 1037


>SB_6351| Best HMM Match : IncA (HMM E-Value=0.13)
          Length = 417

 Score = 29.1 bits (62), Expect = 0.89
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +2

Query: 101 KHRLARHGLYEKKRPTRKQRKERKNRMKKVR 193
           +H LA H   +++RP+   R+  K R++K+R
Sbjct: 378 RHGLASHDKKKRERPSLVARERMKKRLRKIR 408


>SB_16395| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 61

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +2

Query: 98  PKHRLARHGLYEKKRPTRKQRKERKNRMKK 187
           P+  L  H L ++ R  R+QR ER++R+K+
Sbjct: 21  PQQILFTHRLEQRYRVERRQRLERRHRVKR 50


>SB_899| Best HMM Match : Alpha_L_fucos (HMM E-Value=0)
          Length = 1127

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +2

Query: 89   KFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVR 193
            KFEPKH+  +     KKR +RK+  E + + + +R
Sbjct: 1060 KFEPKHK-KKGRSSSKKRHSRKKGHEEQQKKETIR 1093


>SB_22216| Best HMM Match : PGAMP (HMM E-Value=4)
          Length = 132

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 13/36 (36%), Positives = 16/36 (44%)
 Frame = -1

Query: 161 YAVCAWASSSRTGRGGLTCAWARTSWPDRVCRRSKR 54
           Y  CA   S      G+ C +A  + PD   RRS R
Sbjct: 62  YGTCAMPDSGIPPPPGVLCRYAPCAMPDPKMRRSNR 97


>SB_54309| Best HMM Match : SH2 (HMM E-Value=5.1e-17)
          Length = 1249

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 11/35 (31%), Positives = 22/35 (62%)
 Frame = +2

Query: 86  KKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKV 190
           +K + + RLA     E+KR   ++RKE++ + K++
Sbjct: 202 RKLQEEARLAAQRALEEKRKLEEERKEQERKEKEL 236


>SB_42837| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 131

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +2

Query: 131 EKKRPTRKQRKERKNRMKK 187
           EKKR  +KQ+K++K + KK
Sbjct: 16  EKKRKKKKQKKKKKKKKKK 34


>SB_59269| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1008

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 199 GTADLLHSVLTFFTLFARGPLLLVQ 125
           G   +L S + FF LFA+G +L  Q
Sbjct: 719 GKRRVLKSAIAFFELFAKGAILFCQ 743


>SB_36647| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 124

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +2

Query: 134 KKRPTRKQRKERKNRMKK 187
           KKR  +KQ+K++K R KK
Sbjct: 3   KKRKKKKQKKKKKKRKKK 20


>SB_6719| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 437

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = +2

Query: 80  LAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKK 187
           ++KK + K +  ++    K+   RKQRK  + R+K+
Sbjct: 394 VSKKLKKKRKKKKNRKLRKRNRKRKQRKLARKRLKE 429


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,630,501
Number of Sequences: 59808
Number of extensions: 154350
Number of successful extensions: 511
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 478
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 506
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 450550116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)