Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P30_F_C09
         (326 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    20   6.6  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    20   6.6  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    20   8.8  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             20   8.8  

>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 20.2 bits (40), Expect = 6.6
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +3

Query: 132 RRRGPRANSVKNV 170
           RRR PR NSV  +
Sbjct: 411 RRRTPRYNSVSKI 423


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 20.2 bits (40), Expect = 6.6
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -1

Query: 257 SLIPSIHITSWRPHLL*ISW 198
           SL+ ++ ITS +   L ISW
Sbjct: 420 SLVSNVRITSVKSSELSISW 439


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 19.8 bits (39), Expect = 8.8
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -1

Query: 260 YSLIPSIHITSWRPHLL 210
           Y+L+ +I I S RP+LL
Sbjct: 476 YALLTAIVIFSERPNLL 492


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 19.8 bits (39), Expect = 8.8
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +2

Query: 143 PTRKQRKERKN 175
           PTR+ RK R+N
Sbjct: 262 PTRRLRKRRQN 272


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,732
Number of Sequences: 438
Number of extensions: 1764
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7217694
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)