Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P30_F_C08
(725 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_52510| Best HMM Match : RRM_1 (HMM E-Value=8.1e-21) 54 1e-07
SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33) 53 2e-07
SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.) 51 8e-07
SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.) 49 4e-06
SB_59562| Best HMM Match : RRM_1 (HMM E-Value=6.1e-23) 47 1e-05
SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20) 47 1e-05
SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.) 47 1e-05
SB_43251| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 4e-05
SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0) 45 7e-05
SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0) 44 1e-04
SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 1e-04
SB_46435| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 2e-04
SB_8450| Best HMM Match : RRM_1 (HMM E-Value=1.7e-36) 42 4e-04
SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 0.001
SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0) 40 0.002
SB_28395| Best HMM Match : RRM_1 (HMM E-Value=3.9e-25) 40 0.003
SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0) 39 0.005
SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39) 39 0.005
SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.006
SB_29377| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.008
SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.011
SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.011
SB_57433| Best HMM Match : RRM_1 (HMM E-Value=4.5e-24) 36 0.033
SB_27480| Best HMM Match : RRM_1 (HMM E-Value=3.7e-18) 36 0.033
SB_50249| Best HMM Match : RRM_1 (HMM E-Value=0) 36 0.033
SB_34757| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.044
SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.044
SB_37500| Best HMM Match : RRM_1 (HMM E-Value=7.3e-38) 35 0.058
SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.058
SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.077
SB_23824| Best HMM Match : RRM_1 (HMM E-Value=1.9e-19) 34 0.10
SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0) 34 0.10
SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0) 34 0.13
SB_35697| Best HMM Match : RRM_1 (HMM E-Value=1.3e-19) 33 0.24
SB_42891| Best HMM Match : DUF537 (HMM E-Value=1.2e-23) 33 0.24
SB_31414| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.31
SB_11682| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.31
SB_34115| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 32 0.41
SB_23753| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.41
SB_13046| Best HMM Match : La (HMM E-Value=5e-23) 31 0.95
SB_11300| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3
SB_46162| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3
SB_28089| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_15297| Best HMM Match : RRM_1 (HMM E-Value=2.2e-18) 30 1.7
SB_31413| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_1157| Best HMM Match : RRM_1 (HMM E-Value=1.2e-11) 30 2.2
SB_34561| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.2
SB_19908| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_8762| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_39934| Best HMM Match : RRM_1 (HMM E-Value=6.5e-24) 29 3.8
SB_11106| Best HMM Match : RRM_1 (HMM E-Value=1.8e-11) 29 3.8
SB_35358| Best HMM Match : 7tm_1 (HMM E-Value=0.016) 29 5.1
SB_10628| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_9898| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_47003| Best HMM Match : Mito_carr (HMM E-Value=2.3e-29) 28 8.9
SB_28139| Best HMM Match : RRM_1 (HMM E-Value=3.7e-28) 28 8.9
SB_23537| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.9
>SB_52510| Best HMM Match : RRM_1 (HMM E-Value=8.1e-21)
Length = 304
Score = 54.0 bits (124), Expect = 1e-07
Identities = 24/77 (31%), Positives = 40/77 (51%)
Frame = +3
Query: 312 SSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCM 491
++T+ + NLS T E + EL+ G I R+ + DK+ GF F+ + REDA +
Sbjct: 180 TATIRVTNLSEETRESDLQELFRPLGPISRIFLAKDKFTNQSKGFAFINFVHREDAARAI 239
Query: 492 RYINGTRLDDRIIRCDW 542
++G D I+ +W
Sbjct: 240 EVLSGFGYDHLILNVEW 256
>SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33)
Length = 392
Score = 53.2 bits (122), Expect = 2e-07
Identities = 24/74 (32%), Positives = 43/74 (58%)
Frame = +3
Query: 318 TLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRY 497
++++GN+ + +EEQ+ E++S G + + D+ P G+ F EY +E A + MR
Sbjct: 26 SVFVGNIPYEASEEQLKEIFSEVGPVISFRLVFDRETGKPKGYGFCEYKDQETALSAMRN 85
Query: 498 INGTRLDDRIIRCD 539
+NG L+ R +R D
Sbjct: 86 LNGYELNGRALRVD 99
>SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 215
Score = 51.2 bits (117), Expect = 8e-07
Identities = 22/79 (27%), Positives = 44/79 (55%)
Frame = +3
Query: 300 LLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDA 479
L + ST+Y+GNL + T +++++ R G + +V + DK + G F+ + R+ A
Sbjct: 5 LAPSKSTVYVGNLPYSLTNSDLHKVFERYGKVVKVTILRDKETRESRGVAFILFIDRQSA 64
Query: 480 ENCMRYINGTRLDDRIIRC 536
+N + +N ++ R I+C
Sbjct: 65 QNAVAAVNKKQMFGRTIKC 83
>SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 828
Score = 48.8 bits (111), Expect = 4e-06
Identities = 21/63 (33%), Positives = 38/63 (60%)
Frame = +3
Query: 318 TLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRY 497
TLY+ N+ + +E I L+ +CG + +V + D ++ GFCFV +E+A+N ++
Sbjct: 276 TLYVYNIGYDANQEGITALFGQCGIVNKVDIMWDWQRQQCKGFCFVTMATQEEAQNAIQT 335
Query: 498 ING 506
+NG
Sbjct: 336 LNG 338
Score = 30.7 bits (66), Expect = 1.3
Identities = 15/82 (18%), Positives = 38/82 (46%)
Frame = +3
Query: 288 EQEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYA 467
E ++ ++ +TL + + T++ ++ + + K GF FV+Y
Sbjct: 38 EPQEAQESKTTLIVNYIPQDMTDQTFRMMFEAVASLNNCKIVRHKPSGWSYGFGFVDYNT 97
Query: 468 REDAENCMRYINGTRLDDRIIR 533
EDA+ + +NG + +++++
Sbjct: 98 TEDAQKAIDKLNGFTIGNKVLK 119
>SB_59562| Best HMM Match : RRM_1 (HMM E-Value=6.1e-23)
Length = 201
Score = 47.2 bits (107), Expect = 1e-05
Identities = 28/95 (29%), Positives = 48/95 (50%)
Frame = +3
Query: 312 SSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCM 491
++ LY+GNL ++ + + G + +V + + P GF FVEY DAE +
Sbjct: 3 TTKLYVGNLGRNADSSELERAFEKFGRLSKVWVA-----RNPPGFAFVEYEDYRDAEEAV 57
Query: 492 RYINGTRLDDRIIRCDWDAGFIEGRQYGRGKTGGQ 596
R ++G + DR IR ++ + GR G G+ G+
Sbjct: 58 RELDGANVCDRTIRVEF-SNNRGGRDRGGGRPRGR 91
>SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20)
Length = 1313
Score = 47.2 bits (107), Expect = 1e-05
Identities = 21/90 (23%), Positives = 47/90 (52%)
Frame = +3
Query: 261 RTREQGSRSEQEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPC 440
R+R + R + + LY+ +L+ ++ + E++S G ++ V + D+
Sbjct: 1139 RSRSRSPRRRKRSPTPKPTKLYVAHLTRNVNKDHVQEIFSVYGRVKTVDLPTDRTNNLSR 1198
Query: 441 GFCFVEYYAREDAENCMRYINGTRLDDRII 530
GF +VEY E+ E +++++G ++D + I
Sbjct: 1199 GFAYVEYVDPEECEKALKHMDGGQIDGQEI 1228
>SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 721
Score = 47.2 bits (107), Expect = 1e-05
Identities = 24/81 (29%), Positives = 44/81 (54%)
Frame = +3
Query: 321 LYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYI 500
L++ N+ E+ I+EL+S G+I+ + + LD+ G+ VEY ++A++ + +
Sbjct: 295 LFVTNIHEEAQEDDIHELFSDYGEIKNLHVNLDRRTGFIKGYALVEYETFKEAQSALEAL 354
Query: 501 NGTRLDDRIIRCDWDAGFIEG 563
NG + + I DW FI G
Sbjct: 355 NGAEMLGQNISVDW--AFIRG 373
>SB_43251| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 45.6 bits (103), Expect = 4e-05
Identities = 20/67 (29%), Positives = 39/67 (58%)
Frame = +3
Query: 315 STLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMR 494
++L + NL++ TT E + +++ + GD+ + + D+ GF FV +Y + DAE+ M
Sbjct: 16 TSLKVDNLTYRTTVEDLKQVFKKYGDLGDIYIPRDRNTHESRGFAFVRFYEKRDAEDAMD 75
Query: 495 YINGTRL 515
++ T L
Sbjct: 76 CMDATCL 82
>SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 593
Score = 44.8 bits (101), Expect = 7e-05
Identities = 23/83 (27%), Positives = 41/83 (49%)
Frame = +3
Query: 285 SEQEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYY 464
+++++ L +Y+G+++F EE I + G I ++ + D GF FVEY
Sbjct: 92 AQKQRALALMCRVYVGSINFELREEHIRTAFHPFGPINKIDLSWDPLNMKHKGFAFVEYD 151
Query: 465 AREDAENCMRYINGTRLDDRIIR 533
E A+ + +NG L R I+
Sbjct: 152 LPEAAQLALEQMNGVLLGGRNIK 174
>SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 382
Score = 44.4 bits (100), Expect = 1e-04
Identities = 22/73 (30%), Positives = 41/73 (56%)
Frame = +3
Query: 315 STLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMR 494
+T+Y+G L +E I+EL+ + G + V M D+ + G+ FVE+ EDA+ ++
Sbjct: 13 ATIYVGGLDEKVSEALIWELFLQSGPVVNVHMPKDRITQLHQGYGFVEFLGEEDADYAIK 72
Query: 495 YINGTRLDDRIIR 533
+N ++ + IR
Sbjct: 73 VMNMIKVYGKPIR 85
>SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 364
Score = 44.0 bits (99), Expect = 1e-04
Identities = 27/86 (31%), Positives = 46/86 (53%)
Frame = +3
Query: 324 YIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYIN 503
YIGNL F E + + +SR D+ V + D+ + P GF FV + ++++ E+ + ++
Sbjct: 233 YIGNLDFKVNEADLQDRFSRY-DVVDVQVISDRETQRPRGFAFVTFGSKKNMEDAINELD 291
Query: 504 GTRLDDRIIRCDWDAGFIEGRQYGRG 581
G D R ++ + A E R GRG
Sbjct: 292 GQEFDGRSMKVN-QARSREQRGGGRG 316
>SB_46435| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 558
Score = 43.2 bits (97), Expect = 2e-04
Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Frame = +3
Query: 321 LYIGNLSFYTTEEQIYELYSRCGDIRR---VIMGLDKYKKTPCGFCFVEYYAREDAENCM 491
L+IGNL +E I ++ + G+I + G + P G+CFVE+ +EDA +
Sbjct: 389 LWIGNLDKRLSEFNILKILQQFGEIEHFQFLFHGNGPNRGEPRGYCFVEFKKKEDARKAL 448
Query: 492 RYINGTRLDDRIIRCDW 542
R +N + R + DW
Sbjct: 449 RGLNKKIVLSRALVVDW 465
>SB_8450| Best HMM Match : RRM_1 (HMM E-Value=1.7e-36)
Length = 328
Score = 42.3 bits (95), Expect = 4e-04
Identities = 18/54 (33%), Positives = 34/54 (62%)
Frame = +3
Query: 321 LYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAE 482
L++G LS+ TT+E + E +S+ G++ V + +D P GF FV++ + +A+
Sbjct: 31 LFVGGLSYETTKESLKEYFSKYGELVGVDIKMDALTGRPRGFAFVQFKHQSEAD 84
>SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 333
Score = 40.7 bits (91), Expect = 0.001
Identities = 22/71 (30%), Positives = 39/71 (54%)
Frame = +3
Query: 318 TLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRY 497
TL++ NL F E +I EL+S+ G +++V + ++ K P G+ +VEY A +
Sbjct: 172 TLFVSNLPFDAKESEIEELFSKHGVVKQVRLVTNRAGK-PKGYGYVEYEQESSASTAVLT 230
Query: 498 INGTRLDDRII 530
++ T + R I
Sbjct: 231 LDKTEVKGRTI 241
>SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 1026
Score = 40.3 bits (90), Expect = 0.002
Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Frame = +3
Query: 270 EQGSRSEQEKL--LKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCG 443
E + S++ K +K T++I NLSF +T++ I L+ + GDI + +D + G
Sbjct: 399 EDDNHSQRSKPSDVKEGLTVFIRNLSFDSTQKNITNLFKQFGDIAYCKVVVDHLTQHSKG 458
Query: 444 FCFVEYYAREDAENCM 491
FV+Y + E C+
Sbjct: 459 SAFVKYRSAESVTQCL 474
Score = 36.7 bits (81), Expect = 0.019
Identities = 27/107 (25%), Positives = 48/107 (44%), Gaps = 4/107 (3%)
Frame = +3
Query: 234 VNFRCLKTLRTREQGSRSEQEKLLKAS--STLYIGNLSFYTTEEQIYELYSRCGDIRRVI 407
+N + LK ++ + ++ K S S L I NL+F TE + E +S G++
Sbjct: 218 LNGKTLKGVKVKAVIESKDKSSSPKGSKKSRLIIRNLAFNCTEAILKETFSAFGEVSEAS 277
Query: 408 MGLDKY--KKTPCGFCFVEYYAREDAENCMRYINGTRLDDRIIRCDW 542
+ K + GF FV++ DA + +N ++ R + DW
Sbjct: 278 VPQKKVGRRNRKMGFGFVQFTNVFDAAKALEEMNAKKILGRPVAVDW 324
>SB_28395| Best HMM Match : RRM_1 (HMM E-Value=3.9e-25)
Length = 159
Score = 39.5 bits (88), Expect = 0.003
Identities = 22/67 (32%), Positives = 35/67 (52%)
Frame = +3
Query: 324 YIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYIN 503
YIGNLS+ E+ + E + C D+ V + D+ P GF FV + ++E+ E + +
Sbjct: 8 YIGNLSYSVDEQALEEKFHGC-DVVDVKVITDRETGRPRGFGFVTFGSKEEMEKAIDEFD 66
Query: 504 GTRLDDR 524
G D R
Sbjct: 67 GQDFDGR 73
>SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 514
Score = 38.7 bits (86), Expect = 0.005
Identities = 22/85 (25%), Positives = 40/85 (47%)
Frame = +3
Query: 279 SRSEQEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVE 458
+ +E+ K + LY+G+L F TE + ++ G + V + D G+ FV+
Sbjct: 230 AEAERLKQPLGPTRLYVGSLHFNITEAMVKAVFEPFGTVDSVQLIYDSETNRSKGYGFVQ 289
Query: 459 YYAREDAENCMRYINGTRLDDRIIR 533
+ E A+ M +NG L R ++
Sbjct: 290 FREAEAAKRAMEQMNGFELAGRPLK 314
>SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39)
Length = 507
Score = 38.7 bits (86), Expect = 0.005
Identities = 27/91 (29%), Positives = 45/91 (49%)
Frame = +3
Query: 321 LYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYI 500
+Y+GNL E+ +++++ + G I V + + P F FVE+ DAE+ ++
Sbjct: 263 VYVGNLPQDVREKDLHDIFYKYGHIADVDLKNRRGAGPP--FAFVEFEDPRDAEDAVKGR 320
Query: 501 NGTRLDDRIIRCDWDAGFIEGRQYGRGKTGG 593
+G D IR ++ G GR G G GG
Sbjct: 321 DGHEFDGYRIRVEFPRGG-SGRGGGGGGGGG 350
>SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1291
Score = 38.3 bits (85), Expect = 0.006
Identities = 20/68 (29%), Positives = 34/68 (50%)
Frame = +3
Query: 321 LYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYI 500
++IG L Y E+Q+ EL S G++R + D G+ F EY + ++ +
Sbjct: 675 IFIGGLPNYLNEDQVKELLSSFGELRAFNLVKDSATGLSKGYAFCEYVDLGITDVAIQGL 734
Query: 501 NGTRLDDR 524
NG +L D+
Sbjct: 735 NGMQLGDK 742
>SB_29377| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 548
Score = 37.9 bits (84), Expect = 0.008
Identities = 18/70 (25%), Positives = 36/70 (51%)
Frame = +3
Query: 288 EQEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYA 467
+ K+ + T+++ NL T E + +S CGDI+ + MG D K P + ++E+
Sbjct: 63 DANKVEEIRRTVFVNNLDPEITAEMLLSFFSSCGDIKYIRMGGDDGK--PTRYAYIEFAE 120
Query: 468 REDAENCMRY 497
+ + ++Y
Sbjct: 121 TQAIVSALQY 130
>SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 550
Score = 37.5 bits (83), Expect = 0.011
Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 1/97 (1%)
Frame = +3
Query: 306 KASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGF-CFVEYYAREDAE 482
++ +TLY+G L TE+ + + + + G++R + M + C F CF A E A
Sbjct: 301 RSITTLYVGGLEGKVTEQDLRDHFYQFGELRSISM----VPRQNCAFVCFTSRAAAEAAA 356
Query: 483 NCMRYINGTRLDDRIIRCDWDAGFIEGRQYGRGKTGG 593
+ R N L R ++ W G +G+Q G+ GG
Sbjct: 357 D--RSFNKLILKGRRLKIMW--GKSQGQQPAPGRQGG 389
>SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1309
Score = 37.5 bits (83), Expect = 0.011
Identities = 20/75 (26%), Positives = 38/75 (50%)
Frame = +3
Query: 318 TLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRY 497
+LY+GNL T+E I ++++ + R M K P +CFVE+ DA+
Sbjct: 370 SLYVGNLDPKCTQELICSIFNKIAKVVRCKMINSPTDKGP--YCFVEFETHADAQEAKFR 427
Query: 498 INGTRLDDRIIRCDW 542
++ + D+ ++ +W
Sbjct: 428 MDQRTVMDKKLKVNW 442
Score = 31.9 bits (69), Expect = 0.54
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 4/89 (4%)
Frame = +3
Query: 294 EKLLKASSTLYIGNLSFYTTEEQIYELYS-RCGDI---RRVIMGLDKYKKTPCGFCFVEY 461
EKL K +S LY SF+ + +++S D+ R V + D K GF FV +
Sbjct: 504 EKLSKPTSRLYFW--SFHEWSTFLDDIFSYTVPDLFVAREVRVVKDPAKNKSKGFGFVSF 561
Query: 462 YAREDAENCMRYINGTRLDDRIIRCDWDA 548
REDA + ++ + + ++ +W A
Sbjct: 562 VRREDAAKAIAEMDSVTIGGKQVKTNWAA 590
>SB_57433| Best HMM Match : RRM_1 (HMM E-Value=4.5e-24)
Length = 407
Score = 35.9 bits (79), Expect = 0.033
Identities = 20/72 (27%), Positives = 38/72 (52%)
Frame = +3
Query: 318 TLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRY 497
+++IGNL F EE + EL++ CG++ V + D+ GF +V + +++ ++
Sbjct: 57 SVFIGNLPFDIEEEPLRELFTTCGNVESVRLIRDRKTGIGKGFGYVLFESKDAVVFALK- 115
Query: 498 INGTRLDDRIIR 533
+N R IR
Sbjct: 116 MNNAEFKGRKIR 127
>SB_27480| Best HMM Match : RRM_1 (HMM E-Value=3.7e-18)
Length = 209
Score = 35.9 bits (79), Expect = 0.033
Identities = 20/76 (26%), Positives = 37/76 (48%)
Frame = +3
Query: 315 STLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMR 494
+ L++ L+ TT+E + ++SR G I + D+ + F+E+ ED E
Sbjct: 120 NVLFVCKLNPVTTDEDLEIIFSRFGTILSCEVIRDQKTGESLQYAFIEFEKDEDCERAYF 179
Query: 495 YINGTRLDDRIIRCDW 542
++ +DDR I D+
Sbjct: 180 KMDNVLIDDRRIHVDF 195
>SB_50249| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 420
Score = 35.9 bits (79), Expect = 0.033
Identities = 19/71 (26%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Frame = +3
Query: 246 CLKTLRTREQGSRSEQEKLLKA--SSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLD 419
C T+R R G S ++ + K S L + +L F TT +++ E + +CG++ + + ++
Sbjct: 212 CPVTVRARS-GKESNEDLMAKVIQSKKLMVQDLDFDTTVDELREYFEKCGELTGIDLLIN 270
Query: 420 KYKKTPCGFCF 452
K+T F
Sbjct: 271 SEKRTCAAIVF 281
>SB_34757| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 435
Score = 35.5 bits (78), Expect = 0.044
Identities = 19/57 (33%), Positives = 31/57 (54%)
Frame = +3
Query: 321 LYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCM 491
L + L + TTE ++ E ++R G+I + LD + GF FV + EDA+N +
Sbjct: 117 LIVLGLPYATTESEMKEYFTRFGEIDFCEVKLDPNTRRSRGFGFVRFKKDEDAKNVL 173
>SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 35.5 bits (78), Expect = 0.044
Identities = 23/84 (27%), Positives = 40/84 (47%)
Frame = +3
Query: 315 STLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMR 494
S +YIGN+ ++ +I + G +R V + + P GF F + R DAE+ +R
Sbjct: 2 SRVYIGNIGDNASKREIEREFETFGPLRDVWVA-----RNPPGFAFCVFEDRRDAEDAVR 56
Query: 495 YINGTRLDDRIIRCDWDAGFIEGR 566
++G + + R + G GR
Sbjct: 57 ELDGRYICGQRARVELAKGPSRGR 80
>SB_37500| Best HMM Match : RRM_1 (HMM E-Value=7.3e-38)
Length = 496
Score = 35.1 bits (77), Expect = 0.058
Identities = 30/83 (36%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Frame = +3
Query: 285 SEQEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDI-RRVIMGLDKYKKTPCGFCFVEY 461
SE EKL K ++IG L++ TTEE + + +S+ G I VIM D + GF FV Y
Sbjct: 44 SESEKLRK----IFIGGLNWNTTEEGLKDYFSQWGTIVDCVIMKRDGRSR---GFGFVTY 96
Query: 462 YAREDAENCMRYINGTRLDDRII 530
+ + ++ + LDDR I
Sbjct: 97 ESSDSVNEVLKKKDHV-LDDREI 118
>SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 389
Score = 35.1 bits (77), Expect = 0.058
Identities = 15/61 (24%), Positives = 32/61 (52%)
Frame = +3
Query: 351 TEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGTRLDDRII 530
++E I +++ G++ + D+ G+ FV Y +DA +R +NG RL ++ +
Sbjct: 39 SQEDIKKIFGTVGNVTSCKLIRDRATGQSLGYAFVNYDNPDDANKAVREMNGARLQNKTL 98
Query: 531 R 533
+
Sbjct: 99 K 99
>SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 871
Score = 34.7 bits (76), Expect = 0.077
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Frame = +3
Query: 312 SSTLYIGNLSF-YTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENC 488
S TL++ L + I EL+S+ G++ + ++ GF FV+Y E+AE
Sbjct: 204 SRTLFVDRLPRDFKNGGLIKELFSQTGNVTFAQVAINPANGGSRGFAFVDYATAEEAEKG 263
Query: 489 MRYINGTRLDDRIIR 533
R NG +++ IR
Sbjct: 264 QRAHNGRQVEGSNIR 278
>SB_23824| Best HMM Match : RRM_1 (HMM E-Value=1.9e-19)
Length = 623
Score = 34.3 bits (75), Expect = 0.10
Identities = 18/61 (29%), Positives = 33/61 (54%)
Frame = +3
Query: 261 RTREQGSRSEQEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPC 440
++ EQ + S++E TL++ NLSF +TEE + + ++ G ++ + K K P
Sbjct: 518 QSEEQNAGSDEEDT--EGVTLFVKNLSFESTEEALKQKFAAVGPVKSATIAKKKDPKKPG 575
Query: 441 G 443
G
Sbjct: 576 G 576
>SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 718
Score = 34.3 bits (75), Expect = 0.10
Identities = 17/72 (23%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Frame = +3
Query: 315 STLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYY--AREDAENC 488
++LY+G+L+ TE +YE +S G + + + D + G+ +V + + A
Sbjct: 13 ASLYVGDLAPDVTEAMLYEKFSTAGSVLSIRVCRDLVTRRSLGYAYVNFQQPGHDAALEA 72
Query: 489 MRYINGTRLDDR 524
+ ++G L+D+
Sbjct: 73 IARVDGMLLNDK 84
>SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0)
Length = 298
Score = 33.9 bits (74), Expect = 0.13
Identities = 21/70 (30%), Positives = 33/70 (47%)
Frame = +3
Query: 324 YIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYIN 503
Y+G L+ E+ ++ + GDI V + +D GF FVE+ ED + +N
Sbjct: 8 YVGGLAEEVDEKVLHAAFIPFGDITDVQIPMDYTTSKHRGFGFVEFEFAEDTAAAIDNMN 67
Query: 504 GTRLDDRIIR 533
+ L R IR
Sbjct: 68 ESELFGRTIR 77
>SB_35697| Best HMM Match : RRM_1 (HMM E-Value=1.3e-19)
Length = 168
Score = 33.1 bits (72), Expect = 0.24
Identities = 14/61 (22%), Positives = 34/61 (55%)
Frame = +3
Query: 321 LYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYI 500
+++G + E+++ ++ G I V + +D + G+ FV Y +++DA+ C++ +
Sbjct: 76 VFVGKIPRDLYEDELVPVFETAGPIYEVRLMMD-FNGQNRGYAFVVYTSKDDAKRCVKTL 134
Query: 501 N 503
N
Sbjct: 135 N 135
>SB_42891| Best HMM Match : DUF537 (HMM E-Value=1.2e-23)
Length = 2386
Score = 33.1 bits (72), Expect = 0.24
Identities = 21/76 (27%), Positives = 42/76 (55%)
Frame = +3
Query: 303 LKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAE 482
+ AS ++IG LS TE + EL+++ G ++ V++ D+ K+ FV +++ + AE
Sbjct: 520 MAASFPVWIGGLSEDVTENVLLELFNKFGPVKDVVILRDESGKSRQS-GFVHFWSSDVAE 578
Query: 483 NCMRYINGTRLDDRII 530
+NG + +I+
Sbjct: 579 AANVGMNGCDILGKIV 594
>SB_31414| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 610
Score = 32.7 bits (71), Expect = 0.31
Identities = 14/70 (20%), Positives = 34/70 (48%)
Frame = +3
Query: 306 KASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAEN 485
K S ++IG + E+++ ++ CG I + +D GF F + +++A+N
Sbjct: 149 KVCSQVFIGKVPRDCFEDELIPVFEECGHIYDFRLMIDPISGLTKGFAFCTFSNKDEAQN 208
Query: 486 CMRYINGTRL 515
++ ++ +
Sbjct: 209 AVKKLDNKEI 218
Score = 30.7 bits (66), Expect = 1.3
Identities = 22/72 (30%), Positives = 35/72 (48%)
Frame = +3
Query: 303 LKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAE 482
+K +Y+ NLS TEE++ E YS+ G + RV K K + FV + R+ A
Sbjct: 325 MKKVKVVYLRNLSPSITEEKLKEEYSQYGAVDRV----KKLK----DYAFVHFTERDHAL 376
Query: 483 NCMRYINGTRLD 518
+ +G +D
Sbjct: 377 KAIEETDGKEMD 388
>SB_11682| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 184
Score = 32.7 bits (71), Expect = 0.31
Identities = 24/90 (26%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Frame = +3
Query: 300 LLKASST-LYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYARED 476
L +A T +YIG+L ++ +I + G ++ V + + P GF F + R D
Sbjct: 26 LRRAEMTKVYIGSLGDNASKREIENEFGYYGPLKDVWVA-----RNPPGFAFCIFDDRRD 80
Query: 477 AENCMRYINGTRLDDRIIRCDWDAGFIEGR 566
AE+ +R ++G + + +R + G GR
Sbjct: 81 AEDAVRELDGRYICGQRVRVELAKGPSRGR 110
>SB_34115| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 1572
Score = 32.3 bits (70), Expect = 0.41
Identities = 20/64 (31%), Positives = 30/64 (46%)
Frame = +3
Query: 330 GNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGT 509
G L E I ++S G + RV+M + + FV Y + +A N MR +NG
Sbjct: 55 GGLMCGVDRESITRVFSLYGTLERVVMLPQR------SYSFVSYKSHNNALNAMRNLNGK 108
Query: 510 RLDD 521
LD+
Sbjct: 109 ALDE 112
>SB_23753| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 517
Score = 32.3 bits (70), Expect = 0.41
Identities = 13/41 (31%), Positives = 25/41 (60%)
Frame = +3
Query: 288 EQEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIM 410
E+E L + TL++ N+ Y T+ I +L+ +CG ++ V +
Sbjct: 33 EEESLRPSDKTLFVINVPPYCTKLAIKKLFGKCGGVKSVYL 73
>SB_13046| Best HMM Match : La (HMM E-Value=5e-23)
Length = 442
Score = 31.1 bits (67), Expect = 0.95
Identities = 17/70 (24%), Positives = 36/70 (51%)
Frame = +3
Query: 294 EKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYARE 473
+K +K S L L F+ + + +++S G + V + K+ GF F+E+ +++
Sbjct: 82 KKAMKLSQQLE-EKLPFHADHDWLKKVFSEFGKVLYVSLPRFKHNGEIKGFAFIEFESKQ 140
Query: 474 DAENCMRYIN 503
AE+ ++ N
Sbjct: 141 QAEHVVQMFN 150
>SB_11300| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1148
Score = 30.7 bits (66), Expect = 1.3
Identities = 20/79 (25%), Positives = 39/79 (49%)
Frame = +3
Query: 288 EQEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYA 467
+Q++ + T++IG L E I E++ CG+I + + K + FC + + A
Sbjct: 342 KQKEKPEGCRTVFIGGLPESINEHIINEIFYVCGEITSIRISKGKGENAR-KFCHLRFGA 400
Query: 468 REDAENCMRYINGTRLDDR 524
+E + + + +G RL R
Sbjct: 401 KESVDTAVLF-SGYRLYTR 418
>SB_46162| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 291
Score = 30.7 bits (66), Expect = 1.3
Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 1/93 (1%)
Frame = +3
Query: 321 LYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYI 500
LYIGNL+F + E +I + + G + +V + DK GF FV + + + +
Sbjct: 11 LYIGNLNFNSDEGEIEQAFEEFG-VEKVDILRDKESGRSRGFGFVLLQSADQIAPAIEKM 69
Query: 501 NGTRLDDRIIRCDWDAGFIEGR-QYGRGKTGGQ 596
N + + R I E R GR + GG+
Sbjct: 70 NQSSVGGRNITVALALDKTENRGGGGRRERGGR 102
>SB_28089| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 254
Score = 30.3 bits (65), Expect = 1.7
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
Frame = +3
Query: 303 LKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAE 482
+ S+ +Y G L E + + G +R + M L G+ FVE+ DA+
Sbjct: 1 MSRSTRVYFGRLPRDCRERDLEKFVRGYGRVREISMKL--------GYGFVEFDDYRDAD 52
Query: 483 NCMRYINGTR-LDDRIIRC 536
+C+ +NG L +R I C
Sbjct: 53 DCVYDLNGRNLLGEREIAC 71
>SB_15297| Best HMM Match : RRM_1 (HMM E-Value=2.2e-18)
Length = 291
Score = 30.3 bits (65), Expect = 1.7
Identities = 12/54 (22%), Positives = 30/54 (55%)
Frame = +3
Query: 321 LYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAE 482
L++G + + + ++ + + +++ G+IR ++ D+ K G+ FV + AE
Sbjct: 12 LFVGGIPYESGDDALRKFFAQFGEIREAVVIKDRVTKKSKGYGFVTMATSDAAE 65
>SB_31413| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 381
Score = 30.3 bits (65), Expect = 1.7
Identities = 14/66 (21%), Positives = 31/66 (46%)
Frame = +3
Query: 306 KASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAEN 485
++ + ++IG + E+++ L +CG+IR + +D GF F + + A
Sbjct: 150 ESGTEVFIGKIPRDCLEDELIPLLEKCGEIREFRLQMDPATGLNKGFAFCTFTEQTSAYQ 209
Query: 486 CMRYIN 503
+ +N
Sbjct: 210 AITTLN 215
>SB_1157| Best HMM Match : RRM_1 (HMM E-Value=1.2e-11)
Length = 248
Score = 29.9 bits (64), Expect = 2.2
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +3
Query: 309 ASSTLYIGNLSFYTTEEQIYELYSRCGDIR-RVIMGLDKYKKTPCGFCFVEYYARE 473
A YIGNLS+ E+ + E + C + RVI D+ P GF FV A++
Sbjct: 80 AEHRCYIGNLSYSVDEQALEEKFHDCNVVDVRVI--TDRETGRPRGFGFVTLEAKK 133
>SB_34561| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 448
Score = 29.9 bits (64), Expect = 2.2
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = +3
Query: 369 ELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGTRLD 518
EL+S G ++R + D ++ G V + REDA+ ++ NG LD
Sbjct: 1 ELFSEFGQVKRSCVHYDASGRSH-GTAEVVFVRREDAQQALKQYNGVPLD 49
>SB_19908| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 296
Score = 29.5 bits (63), Expect = 2.9
Identities = 20/87 (22%), Positives = 38/87 (43%), Gaps = 5/87 (5%)
Frame = -1
Query: 665 FLCYYFSITATPTVIVSSIFISNLASCFATTVLSTFNESSIPVTANYSVIQPRAIYIPHT 486
F C + + SS+ S ++ TT++ + SI T N++ I +++
Sbjct: 44 FACKLHGVLVMAFSVASSLSASAMSINRYTTIIYASKQKSITFTRNWTKIMLAFLWLFSA 103
Query: 485 IFGIFP-----RIVFYKTKSTRCFLVF 420
IF I P R ++ K+ CF+ +
Sbjct: 104 IFAILPLVGWSRYTYFPAKAI-CFISY 129
>SB_8762| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 655
Score = 29.5 bits (63), Expect = 2.9
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = -1
Query: 566 STFNESSIPVTANYSVIQPR 507
ST+N+ + P++A Y VI+PR
Sbjct: 465 STYNDDTSPISATYKVIEPR 484
>SB_39934| Best HMM Match : RRM_1 (HMM E-Value=6.5e-24)
Length = 343
Score = 29.1 bits (62), Expect = 3.8
Identities = 16/64 (25%), Positives = 30/64 (46%)
Frame = +3
Query: 300 LLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDA 479
L ++ T+++G+L T E I+E +S G+ + + GF FV +E
Sbjct: 37 LEQSRRTIFVGSLHPSTVESTIFEYFSTLGEQVEHVKCIRTLSGKSKGFAFVRLRKKEAV 96
Query: 480 ENCM 491
E+ +
Sbjct: 97 ESVL 100
>SB_11106| Best HMM Match : RRM_1 (HMM E-Value=1.8e-11)
Length = 67
Score = 29.1 bits (62), Expect = 3.8
Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Frame = +3
Query: 312 SSTLYIGNLSFYTTEEQIYELYSRCG--DIRRVIMGLDKYKKTPCGFCFVEYYAREDAEN 485
S+ +Y+G L + T E+ + + + G IR +I+ G+ FVE+ +DAE+
Sbjct: 2 SNRVYLGRLPYGTREDDVKKFFYTYGRFKIREIIL--------KDGYGFVEFDYSDDAED 53
Query: 486 CMRYINGTRL 515
+ NG ++
Sbjct: 54 AVYECNGKKM 63
>SB_35358| Best HMM Match : 7tm_1 (HMM E-Value=0.016)
Length = 133
Score = 28.7 bits (61), Expect = 5.1
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 11/76 (14%)
Frame = -3
Query: 477 HLPAHSILQNKIHK------VFSCICLVPLLLFL--YRRIVNTV---HKFVLLLCKMKGF 331
HLP + IH+ +FSC LVPLL+ Y +++ T+ H F K +
Sbjct: 53 HLPCNEYWPQPIHRQIYTMVLFSCTYLVPLLIIFPAYVKMIITLKRSHSFNNSDRKARWR 112
Query: 330 QCKALMKLLVIFLVRF 283
+ LM +++IF + +
Sbjct: 113 SLRVLMAVVMIFAISY 128
>SB_10628| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1208
Score = 28.3 bits (60), Expect = 6.7
Identities = 17/51 (33%), Positives = 23/51 (45%)
Frame = +3
Query: 387 GDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGTRLDDRIIRCD 539
G+I V + DK GFCF+ Y + + NG +L R IR D
Sbjct: 3 GEIVNVNLVRDKKTGKQKGFCFLCYEDQRSTILAVDNFNGIKLGGRTIRVD 53
>SB_9898| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1092
Score = 28.3 bits (60), Expect = 6.7
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = -1
Query: 680 GIWVYFLCYYFSITATPTVIVSSIFISNLASCFATTVLSTFNE 552
GIW YF+ Y + P+V +S++ ++ AS F + NE
Sbjct: 719 GIWDYFIKSYHELLEKPSVSISTVALT-AASSFVYFAKLSMNE 760
>SB_47003| Best HMM Match : Mito_carr (HMM E-Value=2.3e-29)
Length = 868
Score = 27.9 bits (59), Expect = 8.9
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Frame = -3
Query: 519 HPASCHLYT--SYNFRHLPAHSILQ-NKIHKVFSC-ICLVPLLLFLYRRIVNTVH 367
HP H Y S RHLP+H ILQ + I++ S I +P + Y + T H
Sbjct: 704 HPPVSHTYRHKSAGIRHLPSHIILQVSHIYRHTSAGISHLPSQIRRYPTLTTTHH 758
>SB_28139| Best HMM Match : RRM_1 (HMM E-Value=3.7e-28)
Length = 419
Score = 27.9 bits (59), Expect = 8.9
Identities = 20/67 (29%), Positives = 32/67 (47%)
Frame = +3
Query: 291 QEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAR 470
+EKL K + LYI L TT++ + L + G I LDK G+ FV++ +
Sbjct: 94 EEKLSKTN--LYIRGLKANTTDDDLVRLCHKYGTIISTKAILDKDTNLCKGYGFVDFESP 151
Query: 471 EDAENCM 491
A+ +
Sbjct: 152 ISAQKAV 158
>SB_23537| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 371
Score = 27.9 bits (59), Expect = 8.9
Identities = 20/90 (22%), Positives = 45/90 (50%), Gaps = 8/90 (8%)
Frame = +3
Query: 288 EQEKLLKASSTLYIGNLSFYTTEEQIYELYSR----CGDIRRVIMGLDKY--KKTPC--G 443
+Q+ + + +Y GNL F T++++ ++ D+ V +++ ++ P G
Sbjct: 41 DQKMVFADPNKVYAGNLPFKLTQDELKAVFEAESLTVTDVLIVKEPRNEFYQQQEPRSRG 100
Query: 444 FCFVEYYAREDAENCMRYINGTRLDDRIIR 533
F FV + EDA+ ++ +NG + R ++
Sbjct: 101 FGFVTFANPEDAQTAVKSLNGKEVQGRTLK 130
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,839,943
Number of Sequences: 59808
Number of extensions: 445943
Number of successful extensions: 1151
Number of sequences better than 10.0: 57
Number of HSP's better than 10.0 without gapping: 1025
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1149
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1937927537
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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