Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P30_F_C02
         (827 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          23   3.0  
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    22   5.2  
AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    22   6.8  
AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.         21   9.0  

>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +1

Query: 505 PKEDT*AYARWKQQSETQRQRQRL 576
           PK+    +ARWK   E  RQR  L
Sbjct: 437 PKQYMEIFARWKDILEKPRQRGTL 460


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = +3

Query: 639 IHKSLVRRNRWSPVLRRVARPPVSV 713
           + KS   +N+ +P+L + +  PVS+
Sbjct: 137 VEKSSKLKNKSAPILTKTSPTPVSI 161


>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 8/31 (25%), Positives = 17/31 (54%)
 Frame = -3

Query: 417 SPLKNSQNF*FTAQTKYILYFLEFSGNHVLY 325
           +PL + Q + F    K +++ +  SGN  ++
Sbjct: 65  NPLFDGQLYSFNTFAKLLIFVVSLSGNSAVF 95


>AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.
          Length = 247

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 13/50 (26%), Positives = 22/50 (44%)
 Frame = +3

Query: 72  DCEIV*VIRLIHLIYLV*TIQYYYREERETHCRADYGDVDACVQGLKVYC 221
           +C++V   +L   +    T Q+  R+ER  H +A  G     V     +C
Sbjct: 49  NCKLVQAPKLNAEVKRAITQQHSERDERLAHVQAQLGAAMGAVGTALTFC 98


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,103
Number of Sequences: 336
Number of extensions: 3715
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 22725411
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)