Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P30_F_C02
         (827 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16H5.02 |pfk1||6-phosphofructokinase |Schizosaccharomyces po...    27   3.2  
SPBC32F12.08c |duo1||DASH complex subunit Duo1 |Schizosaccharomy...    27   4.3  
SPAC19G12.12 |dlp1||decaprenyl diphosphate synthase subunit 2 Dl...    26   5.7  
SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces p...    26   7.5  
SPAC1D4.03c |aut12||autophagy associated protein Aut12|Schizosac...    25   9.9  

>SPBC16H5.02 |pfk1||6-phosphofructokinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 942

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +3

Query: 189 DACVQGLKVYCDETQVAEKLSRRSGFTC 272
           D C+  +  YCD  + +   SRR  F C
Sbjct: 727 DTCLNAVMEYCDTIKQSASASRRRVFVC 754


>SPBC32F12.08c |duo1||DASH complex subunit Duo1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 166

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 19/51 (37%), Positives = 27/51 (52%)
 Frame = +3

Query: 387 IKSFESSLKGINLLFKLWL*RKSITWPRTPHTRENQKFSSQRRYLSLRSME 539
           IKSFE+S+   N L +LW    S    +T HT +N   +S  + LS  + E
Sbjct: 33  IKSFETSINNSNRLIQLW----SSVLSQTEHT-QNLILNSDWKGLSFDNEE 78


>SPAC19G12.12 |dlp1||decaprenyl diphosphate synthase subunit 2 Dlp1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 294

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = +2

Query: 548 LKHNGSAKDLASVMENLKKGGLVSRQNQSL 637
           L++N   + +ASV+ NL +G   SRQN S+
Sbjct: 164 LENNAITEIMASVIANLVEGHFGSRQNGSV 193


>SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1040

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = +3

Query: 639 IHKSLVRRNRWSPVLRRVARPP 704
           ++ S++ +N+WS V+ R+  PP
Sbjct: 280 VYSSILGKNKWSLVMERLPIPP 301


>SPAC1D4.03c |aut12||autophagy associated protein
           Aut12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -2

Query: 424 RFIPFKELSKLLIHSANEVYFIFSRIFR 341
           R +   +  KLL+H AN++Y +F  +FR
Sbjct: 288 RLVCMVKAKKLLLH-ANDLYLLFLSLFR 314


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,189,327
Number of Sequences: 5004
Number of extensions: 62943
Number of successful extensions: 143
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)