Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P30_F_C02
         (827 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54131| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.86 
SB_13066| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  

>SB_54131| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3160

 Score = 31.5 bits (68), Expect = 0.86
 Identities = 22/74 (29%), Positives = 32/74 (43%)
 Frame = +1

Query: 124  ERFSIITERSVRRTVAPTTVTWTRASKD*KFIATKLKLQKNFRADLDLRAGHLQS*SVIS 303
            E   +++ER    T  PT + W +         TK  L +NF   LDL AGH+     I 
Sbjct: 1094 EHTLVVSERGRDDTTLPTDL-WKKPVMKENSTITKPHLVENFV--LDLMAGHMDDGETIE 1150

Query: 304  YYQINLTVEHVITG 345
            + +    +  V TG
Sbjct: 1151 FTRFTRVIHPVYTG 1164


>SB_13066| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 865

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = -2

Query: 793 FSQIRLHRAGFHFRSCHVLQSLGRTLHTLTGGRATRRS--TGDHLLRR 656
           F +IRLH  GFHF +    ++   T  T +   A  R+  TG  L RR
Sbjct: 760 FKRIRLHTKGFHFDTTRPHENAETTTITSSTAHAYSRAKWTGPELSRR 807


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,819,633
Number of Sequences: 59808
Number of extensions: 471087
Number of successful extensions: 1184
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1091
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1180
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2323539746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)