Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P30_F_C02
         (827 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78544-2|CAB01758.1|  368|Caenorhabditis elegans Hypothetical pr...    31   1.0  
AF078788-4|AAC26961.1|  342|Caenorhabditis elegans Hypothetical ...    29   3.1  
Z82269-1|CAB05205.2|  651|Caenorhabditis elegans Hypothetical pr...    28   9.4  
AF043706-1|AAB97603.3| 1623|Caenorhabditis elegans Hypothetical ...    28   9.4  
AF026213-4|AAB71305.2|  458|Caenorhabditis elegans Cell death ab...    28   9.4  

>Z78544-2|CAB01758.1|  368|Caenorhabditis elegans Hypothetical
           protein K04G11.3 protein.
          Length = 368

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -1

Query: 794 VQSDQTSSSWLSFPKLPCAAVFGKNFAYADW 702
           V    T  SW+ F  +P    F +  AYADW
Sbjct: 84  VHEKVTFKSWIGFSSVPHHLTFNRKVAYADW 114


>AF078788-4|AAC26961.1|  342|Caenorhabditis elegans Hypothetical
           protein ZC190.2 protein.
          Length = 342

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -2

Query: 757 FRSCHVLQSLGRTLHTLTGGRATRRSTGDH 668
           FRS  + +   +TL+T+ G R  R ST DH
Sbjct: 290 FRSKRIKEENTKTLYTIDGRRMNRMSTDDH 319


>Z82269-1|CAB05205.2|  651|Caenorhabditis elegans Hypothetical
           protein F52G2.3 protein.
          Length = 651

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -1

Query: 770 SWLSFPKLPCAAVFGKNFAYADW 702
           SW+ F   P    + +N  YADW
Sbjct: 92  SWIGFSSDPSHLTYDRNIGYADW 114


>AF043706-1|AAB97603.3| 1623|Caenorhabditis elegans Hypothetical
           protein ZC123.3 protein.
          Length = 1623

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +3

Query: 135 YYYREERETHCRADYGDVDA-CVQGLKVYCDETQVAEKLSRRSGFTC 272
           Y Y+E  E H +  + DVD  C     ++C E +   KL+R   ++C
Sbjct: 111 YKYQETLEIHMKEKHNDVDVKC-----MFCAENRPHPKLARGETYSC 152


>AF026213-4|AAB71305.2|  458|Caenorhabditis elegans Cell death
           abnormality protein 8 protein.
          Length = 458

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +3

Query: 417 INLLFKLWL*RKSITWPRTPHTRENQKFS-SQRRYLSLRSM 536
           IN++  +W+    + W R  H R    F  +Q+R++ L  M
Sbjct: 90  INIISMVWMLDDEMHWKRRAHPRRTGTFELNQKRFIPLSKM 130


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,563,756
Number of Sequences: 27780
Number of extensions: 349516
Number of successful extensions: 837
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 809
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 837
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2050970610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)