Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P30_F_B23
         (551 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    24   1.2  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            22   4.8  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    21   6.3  
DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex det...    21   8.3  
DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex det...    21   8.3  
DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex det...    21   8.3  
DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex det...    21   8.3  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   8.3  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   8.3  

>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -2

Query: 172 NNTLYTHGAHTNYRLDIRLNYNXGNFNYVLMY 77
           N T++ +  +  Y  + + NYN  N+N  L Y
Sbjct: 87  NKTIHNNNNY-KYNYNNKYNYNNNNYNKKLYY 117


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -3

Query: 300 SCRYNISAAFSNSSQFGTKVITANY 226
           S RY ++ AF  S  FGT  I +++
Sbjct: 323 SKRYKMAVAFMLSHPFGTPRIMSSF 347


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = -2

Query: 139 NYRLDIRLNYNXGNFNYV 86
           NY  D  + Y+ GNF  +
Sbjct: 186 NYTTDCTIEYSTGNFTCI 203


>DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -2

Query: 145 HTNYRLDIRLNYNXGNFNYVLMY 77
           +T +  + + NYN  N+N  L Y
Sbjct: 88  NTIHNNNYKYNYNNNNYNKKLYY 110


>DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -2

Query: 145 HTNYRLDIRLNYNXGNFNYVLMY 77
           +T +  + + NYN  N+N  L Y
Sbjct: 88  NTIHNNNYKYNYNNNNYNKKLYY 110


>DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -2

Query: 145 HTNYRLDIRLNYNXGNFNYVLMY 77
           +T +  + + NYN  N+N  L Y
Sbjct: 88  NTIHNNNYKYNYNNNNYNKKLYY 110


>DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -2

Query: 145 HTNYRLDIRLNYNXGNFNYVLMY 77
           +T +  + + NYN  N+N  L Y
Sbjct: 88  NTIHNNNYKYNYNNNNYNKKLYY 110


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = -3

Query: 375 LLSVILTLNAPFECEYLT 322
           LLSV L  NA F CE  T
Sbjct: 339 LLSVHLGGNAEFRCEVST 356


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = -3

Query: 375 LLSVILTLNAPFECEYLT 322
           LLSV L  NA F CE  T
Sbjct: 339 LLSVHLGGNAEFRCEVST 356


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,085
Number of Sequences: 438
Number of extensions: 2727
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15827139
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)