Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P30_F_B19
(827 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0608 + 30329174-30329362,30329681-30329907,30330035-303301... 46 3e-05
03_02_0460 - 8654283-8654302,8654669-8654847,8654940-8655125,865... 43 3e-04
02_04_0370 - 22427559-22427590,22427783-22427964,22428754-224289... 39 0.004
09_03_0101 + 12374771-12374926,12375505-12375731,12375816-123759... 38 0.013
02_05_0336 + 28033315-28033365,28033580-28033585,28033798-280338... 31 0.85
12_02_1028 + 25499354-25499809 29 6.0
09_03_0157 + 12860078-12860390,12860474-12860622,12860967-12861128 28 7.9
>02_05_0608 +
30329174-30329362,30329681-30329907,30330035-30330190,
30330893-30331078,30331184-30331368,30331571-30331602
Length = 324
Score = 46.4 bits (105), Expect = 3e-05
Identities = 28/129 (21%), Positives = 58/129 (44%), Gaps = 5/129 (3%)
Frame = +2
Query: 389 DKISKKFHLSKSRLSALNESGQLIVFHLVTLVWGGDAILREGFIFNISQLWEG-----YP 553
+K+ H + ++ ES ++ L + +E + + W G +P
Sbjct: 75 EKLDLATHAGRIKIRKFKESAWKCIYFLSAELLALSVTYKESWFTSTKNFWVGPGDQVWP 134
Query: 554 VHPMSFLLKLWWVVQASYWLHTIPELYFQRIKKDEWAGRIRNAATAFGFVALAYGFNFQR 733
+ F LKL ++ A ++ ++I L F IK+ ++ + + + +AL+Y F F R
Sbjct: 135 DQRIKFKLKLVYMYAAGFYTYSIFALQFWEIKRSDFGISMVHHVVSVILIALSYIFRFAR 194
Query: 734 VGVCLVVLH 760
VG ++ +H
Sbjct: 195 VGSIVLAIH 203
>03_02_0460 -
8654283-8654302,8654669-8654847,8654940-8655125,
8655626-8655781,8656223-8656431,8657254-8657358
Length = 284
Score = 42.7 bits (96), Expect = 3e-04
Identities = 33/148 (22%), Positives = 69/148 (46%), Gaps = 2/148 (1%)
Frame = +2
Query: 323 CAVFFYSLVCIVMHAILQEYFLDKISKKFH--LSKSRLSALNESGQLIVFHLVTLVWGGD 496
CA FF L +V + F K SK + + ++++ +ES + ++ W
Sbjct: 24 CARFF--LDRLVYKPLAAYCFSSKASKLMNDEVRQAKIVKFSESIWKLTYYGSVQAWVLL 81
Query: 497 AILREGFIFNISQLWEGYPVHPMSFLLKLWWVVQASYWLHTIPELYFQRIKKDEWAGRIR 676
I +E + + Q +EG+P M+ L L+++ Q +++++I L ++ ++A +
Sbjct: 82 IIKQEPWSLDTMQYFEGWPNQYMTSSLMLFYMCQCGFYIYSIFALVAWETRRKDFAVMMS 141
Query: 677 NAATAFGFVALAYGFNFQRVGVCLVVLH 760
+ + AY F R+G ++ LH
Sbjct: 142 HHVVTSILIGYAYLTGFFRIGTIILALH 169
>02_04_0370 -
22427559-22427590,22427783-22427964,22428754-22428939,
22429125-22429280,22429366-22429589,22430933-22430968,
22431390-22431539
Length = 321
Score = 39.1 bits (87), Expect = 0.004
Identities = 24/129 (18%), Positives = 54/129 (41%), Gaps = 5/129 (3%)
Frame = +2
Query: 389 DKISKKFHLSKSRLSALNESGQLIVFHLVTLVWGGDAILREGFIFNISQLWEG-----YP 553
+K+ + ++ ++ ES V+ L + E + N W G +P
Sbjct: 73 EKVDYEKEETRKKIRKFKESAWKCVYFLSGEILSLSVTYNEPWFTNTKYFWVGPGDQVWP 132
Query: 554 VHPMSFLLKLWWVVQASYWLHTIPELYFQRIKKDEWAGRIRNAATAFGFVALAYGFNFQR 733
+ + LK ++ A ++ ++I L F ++ ++ + + + L+Y F F R
Sbjct: 133 DQKIKWKLKAVYMYAAGFYTYSIFALMFWETRRSDFGVSMSHHVATVALIVLSYVFRFAR 192
Query: 734 VGVCLVVLH 760
VG ++ +H
Sbjct: 193 VGSVVLAIH 201
>09_03_0101 +
12374771-12374926,12375505-12375731,12375816-12375971,
12376066-12376251,12376407-12376591,12376984-12376991
Length = 305
Score = 37.5 bits (83), Expect = 0.013
Identities = 25/120 (20%), Positives = 49/120 (40%), Gaps = 5/120 (4%)
Frame = +2
Query: 416 SKSRLSALNESGQLIVFHLVTLVWGGDAILREGFIFNISQLWEG-----YPVHPMSFLLK 580
S+ +++ ES V+ L + E + N W G +P LK
Sbjct: 73 SRKKINKFKESAWKFVYFLSAELLSLSVTYNEPWFKNTRNFWVGPGEQIWPDQKTKLKLK 132
Query: 581 LWWVVQASYWLHTIPELYFQRIKKDEWAGRIRNAATAFGFVALAYGFNFQRVGVCLVVLH 760
++ A ++ ++I L F ++ ++ + + + L+Y F F RVG ++ LH
Sbjct: 133 AVYMFAAGFYTYSIFALLFWETRRSDFGVSMSHHLATVVLIVLSYIFRFARVGSVVLALH 192
>02_05_0336 +
28033315-28033365,28033580-28033585,28033798-28033884,
28034741-28034830,28035736-28037778,28037916-28038062,
28038148-28038560,28038656-28038755
Length = 978
Score = 31.5 bits (68), Expect = 0.85
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = -3
Query: 510 SRSIASPPHTRVTRWNTISCPDSLRAL 430
S+++A P H R RW + CP R +
Sbjct: 670 SQNLAVPDHVRTLRWGLVECPSQFRCV 696
>12_02_1028 + 25499354-25499809
Length = 151
Score = 28.7 bits (61), Expect = 6.0
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = +2
Query: 119 FSHEFVIQNHADIVSCVVMVFLVGL 193
F+HE I + + + SC+V VF++GL
Sbjct: 75 FAHEDAICHVSIVASCIVRVFIIGL 99
>09_03_0157 + 12860078-12860390,12860474-12860622,12860967-12861128
Length = 207
Score = 28.3 bits (60), Expect = 7.9
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = -1
Query: 404 SWKFYQGSTPEE*HASQYRQVNRKTRHKHLSTQIHK*KVRLSALLSL 264
SW + Q + + S ++NRK HLS +H K++L + +
Sbjct: 160 SWNYLQKKAEKIVNQSNQSRINRKESLFHLSCNLHGEKLKLQCAIGV 206
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,907,398
Number of Sequences: 37544
Number of extensions: 538843
Number of successful extensions: 1201
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1201
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2279943096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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