Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P30_F_B14
         (827 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.03 ||SPAC644.01c|SBDS family ribosome maturation protein...   264   1e-71
SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces pomb...    29   1.1  
SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5 |Schizosacch...    29   1.1  
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||...    27   3.2  
SPAC1A6.01c ||SPAC23C4.20c|human thyroid receptor interacting pr...    26   5.7  
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce...    26   7.5  
SPBC1734.02c |cdc27|SPBC337.18c|DNA polymerase delta subunit Cdc...    26   7.5  
SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|ch...    25   9.9  
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    25   9.9  

>SPAC4F8.03 ||SPAC644.01c|SBDS family ribosome maturation
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 246

 Score =  264 bits (646), Expect = 1e-71
 Identities = 124/242 (51%), Positives = 173/242 (71%), Gaps = 2/242 (0%)
 Frame = +1

Query: 88  IFTPTNQIRLTNVAIVRLKKGGKRFEIACYKNKVLSWRNKLEKDIDEVLQTHTVFTNVSK 267
           I  P  QIRLTNV++V+ KKGGKRFE+ACYKNKV  WRNK+E D+DEVLQ H VF NVSK
Sbjct: 3   ISQPVGQIRLTNVSVVKYKKGGKRFEVACYKNKVTEWRNKIETDLDEVLQIHNVFNNVSK 62

Query: 268 GQVAKKEDLIKIFAKEDQTEICKEILEKGELQVSDKERHSQIDSLFKDIATTVADKCVNP 447
           G VA ++DL K F  +D  +I  EIL+KG+ QV +KERH Q+ S ++DI + V   C++P
Sbjct: 63  GHVASRQDLKKAFGTDDIDKIILEILQKGDFQVGEKERHHQMSSTYRDIVSHVTAMCMDP 122

Query: 448 ETKRPYPVSIIEKAIKDVHFSVNVNKSAKQQALDVIQIL--KNEIPIERAQMRVRILLTG 621
            +KRPYP SIIEKA+ D  FSV+ +K+AK QAL+ I+ L  KNEIPI RA+MR+RI++  
Sbjct: 123 NSKRPYPASIIEKALSDCGFSVSTSKTAKSQALEAIKKLQEKNEIPIVRARMRIRIVVDV 182

Query: 622 KDARKTKDKVVKLATTVEDENWESGTANIVCLIDPGNFRSLDEMIRTETKGTGQFELLNL 801
           K  +  ++++  LA  +E+EN +      + L+ PGN++ +DE++R ETK  G  ++L++
Sbjct: 183 KQGKALRERLRSLADEIEEENIDD-EYECIALVIPGNYKLIDELVRNETKNRGMVQVLDM 241

Query: 802 KE 807
            E
Sbjct: 242 SE 243


>SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 933

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 22/73 (30%), Positives = 30/73 (41%)
 Frame = +1

Query: 472 SIIEKAIKDVHFSVNVNKSAKQQALDVIQILKNEIPIERAQMRVRILLTGKDARKTKDKV 651
           SI  K  K++H S NV  S    AL    +   E      +   ++  T K A K   KV
Sbjct: 743 SIDSKESKNMHISSNVVASEAPDALAANLLAMYE---SNPKKSAKVSATNKKALKVLLKV 799

Query: 652 VKLATTVEDENWE 690
           VK+      E W+
Sbjct: 800 VKVQKLYGQEKWD 812


>SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 834

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = +1

Query: 424 VADKCVNPETKRPYPVSIIEKAIKDVHFSVNVNKSAKQQALDVI 555
           + D CV  +  RP+ V I  +AI D  +    + S  ++  D++
Sbjct: 432 IIDLCVRVKALRPFSVDIFSQAILDPSYVSTTDCSVSEKRTDIL 475


>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1158

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
 Frame = +1

Query: 148 GGKRFEIACYKNKVLS---WRNKLEKDIDEVLQTHTVF 252
           G + F I+ Y N +++   W+  +EK  D + + H VF
Sbjct: 775 GARGFSISLYLNTLIARDQWKQHIEKQQDIIRKRHLVF 812


>SPAC1A6.01c ||SPAC23C4.20c|human thyroid receptor interacting
           protein homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 455

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +1

Query: 442 NPETKRPYPVSIIEKAIKDVHFSVNVNKSAKQ 537
           N  + R   ++ IEKAI+ +  S N+NK+ ++
Sbjct: 162 NSSSNRIEGLADIEKAIRQIEISQNINKAERR 193


>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1666

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 12/49 (24%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = -3

Query: 810  HFLQIQ*FKLPCALCFSSYHFIQTSKVARIYKTHNISSSRFPVFI-FHC 667
            +F++I  ++   A+ ++ YH ++   V  I     +    +P FI F C
Sbjct: 1551 YFVEIGNYECFAAILYTCYHLLRNDLVMEISWRKGLQDYAYPYFINFQC 1599


>SPBC1734.02c |cdc27|SPBC337.18c|DNA polymerase delta subunit
           Cdc27|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 372

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 5/75 (6%)
 Frame = +1

Query: 502 HFSVNVNKSAKQQALDVIQILKNEIP--IERAQMRVRILLTGKDARK---TKDKVVKLAT 666
           +F + +   AK  A D  Q +   +     R + +V+   T KD      TK++ V  + 
Sbjct: 266 NFQLEIGTEAKSAAPDEPQEIIKSVSGGKRRGKRKVKKYATTKDEEGFLVTKEEEVWESF 325

Query: 667 TVEDENWESGTANIV 711
           + EDEN  +GT+N+V
Sbjct: 326 S-EDENISTGTSNVV 339


>SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 684

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
 Frame = +1

Query: 88  IFTPTNQIRLTNVAIVRLKKGGKRFEIACYKNKV---LSWRN-KLEKD 219
           +F+PT++ R TN+  V    G    E+  +  K+   +SWR   L+KD
Sbjct: 427 MFSPTSKNRATNINCVLSNLGKYNLELMNWHYKLPDTISWRTIDLKKD 474


>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 18/47 (38%), Positives = 23/47 (48%)
 Frame = -1

Query: 317 SSLAKIFIKSSFFATCPLETFVKTV*VCRTSSMSFSSLFRQDSTLFL 177
           SS ++    SSF  T    TF+ TV V  +SS S +S     ST  L
Sbjct: 229 SSSSRPSSSSSFITTMSSSTFISTVTVTPSSSSSSTSSEVPSSTAAL 275


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,006,848
Number of Sequences: 5004
Number of extensions: 57890
Number of successful extensions: 197
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)