Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P30_F_B14
         (827 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0052 + 361505-361969,362270-362348,362816-362880,363069-36...   204   7e-53
11_01_0737 + 6211149-6211466,6212022-6212183,6212290-6213101,621...    30   2.6  
03_05_0196 + 21849370-21850278,21850424-21851050                       29   6.0  
12_02_0709 - 22359705-22360292,22360396-22360560,22360650-223611...    28   7.9  
01_07_0043 + 40699334-40700482                                         28   7.9  

>08_01_0052 +
           361505-361969,362270-362348,362816-362880,363069-363236,
           363731-364171
          Length = 405

 Score =  204 bits (498), Expect = 7e-53
 Identities = 92/148 (62%), Positives = 122/148 (82%)
 Frame = +1

Query: 97  PTNQIRLTNVAIVRLKKGGKRFEIACYKNKVLSWRNKLEKDIDEVLQTHTVFTNVSKGQV 276
           P  Q RLTNVA+VRL+K G+RFEIAC+ NKVLSWR ++EKDIDEVLQ+HTV++NVSKG +
Sbjct: 8   PVGQKRLTNVAVVRLRKHGQRFEIACFPNKVLSWRTRVEKDIDEVLQSHTVYSNVSKGVL 67

Query: 277 AKKEDLIKIFAKEDQTEICKEILEKGELQVSDKERHSQIDSLFKDIATTVADKCVNPETK 456
           AK +DL+K F+ +D T IC EIL+KGELQVS KER +Q+ S F +IAT V DK +NPET+
Sbjct: 68  AKSKDLLKAFSTDDHTAICLEILDKGELQVSGKEREAQLSSQFHEIATIVMDKTINPETR 127

Query: 457 RPYPVSIIEKAIKDVHFSVNVNKSAKQQ 540
           RPY +++IE+ + DVHF+V+ N ++K+Q
Sbjct: 128 RPYTITMIERLMHDVHFAVDPNLTSKEQ 155



 Score = 40.7 bits (91), Expect = 0.001
 Identities = 26/93 (27%), Positives = 44/93 (47%)
 Frame = +1

Query: 541 ALDVIQILKNEIPIERAQMRVRILLTGKDARKTKDKVVKLATTVEDENWESGTANIVCLI 720
           AL VI+ L    PI+RA +RVR            +K+ +    V  ++      ++VC I
Sbjct: 204 ALKVIKKLTEHFPIKRAPLRVRFTAPKSKFASLTEKLEEWNANVISKDESGSQPSVVCEI 263

Query: 721 DPGNFRSLDEMIRTETKGTGQFELLNLKEMVEG 819
           +P   RS +E ++      G+ E+L++    EG
Sbjct: 264 EPSILRSCEERLKDV---QGRVEVLSVSAHAEG 293


>11_01_0737 +
           6211149-6211466,6212022-6212183,6212290-6213101,
           6213188-6213395,6214157-6214364,6214752-6215206,
           6215585-6216011,6216391-6216471,6216571-6216761,
           6216855-6216998
          Length = 1001

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = +1

Query: 181 NKVLSWRNKLEKDIDEVLQTHTVFTNVSKGQVAKKEDLIKIFAKED 318
           N + S  +KL   +D+VL T       + G   KK+DL+ +   ED
Sbjct: 661 NSIASSLSKLTMSVDDVLCTSRSNDTENNGSSGKKDDLLLLVTTED 706


>03_05_0196 + 21849370-21850278,21850424-21851050
          Length = 511

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 20/63 (31%), Positives = 32/63 (50%)
 Frame = +1

Query: 475 IIEKAIKDVHFSVNVNKSAKQQALDVIQILKNEIPIERAQMRVRILLTGKDARKTKDKVV 654
           II   I D+ FS     S+      + +++KN   + +AQ  VR    G+D + T+D V 
Sbjct: 297 IISTVIFDI-FSAGSETSSTTLDWTMSELMKNPRILRKAQSEVRETFKGQD-KLTEDDVA 354

Query: 655 KLA 663
           KL+
Sbjct: 355 KLS 357


>12_02_0709 -
           22359705-22360292,22360396-22360560,22360650-22361157,
           22361159-22361577,22362261-22362722,22362853-22364415
          Length = 1234

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 22/93 (23%), Positives = 41/93 (44%), Gaps = 4/93 (4%)
 Frame = +1

Query: 493 KDVHFSVNVNKSAKQQALDVIQILKNEIPIERAQMRVRIL----LTGKDARKTKDKVVKL 660
           K +H       + +Q  ++ +    + I    ++  +R+L    LT KDA   K  V  L
Sbjct: 387 KKLHMQAINIFTQQQHPMEALSTTSSNIDTTYSETNIRLLVDIFLTNKDASTRKMAVGIL 446

Query: 661 ATTVEDENWESGTANIVCLIDPGNFRSLDEMIR 759
           A  + D+N  +  AN   +     F++ D ++R
Sbjct: 447 AILLSDQNKSNANANATII-----FKASDTVVR 474


>01_07_0043 + 40699334-40700482
          Length = 382

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +1

Query: 721 DPGNFRSLDEMIRTETKGTGQFE 789
           D GNF  +D+M R    GT QFE
Sbjct: 141 DGGNFYIMDKMSRAGVSGTNQFE 163


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,783,368
Number of Sequences: 37544
Number of extensions: 313508
Number of successful extensions: 797
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 782
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 797
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2279943096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)