Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P30_F_B14
         (827 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014296-1154|AAF50645.1|  252|Drosophila melanogaster CG8549-PA...   347   1e-95
AY094666-1|AAM11019.1|  252|Drosophila melanogaster GH01786p pro...   345   6e-95
AY058795-1|AAL14024.1| 1412|Drosophila melanogaster SD10676p pro...    31   2.5  
AF327844-1|AAK50882.1| 1412|Drosophila melanogaster bicoid mRNA ...    31   2.5  
AE014134-2933|AAF53668.2| 1412|Drosophila melanogaster CG10302-P...    31   2.5  
AY089304-1|AAL90042.1|  240|Drosophila melanogaster AT10515p pro...    30   4.4  
AE014134-2034|AAF53073.1|  240|Drosophila melanogaster CG14921-P...    30   4.4  

>AE014296-1154|AAF50645.1|  252|Drosophila melanogaster CG8549-PA
           protein.
          Length = 252

 Score =  347 bits (853), Expect = 1e-95
 Identities = 164/249 (65%), Positives = 198/249 (79%), Gaps = 1/249 (0%)
 Frame = +1

Query: 79  MSKIFTPTNQIRLTNVAIVRLKKGGKRFEIACYKNKVLSWRNKLEKDIDEVLQTHTVFTN 258
           MSKIFTPTNQIRLTNVAIVRLKKGGKRFEIACYKNKVLSWR+  EKDIDEVLQTHTVFTN
Sbjct: 1   MSKIFTPTNQIRLTNVAIVRLKKGGKRFEIACYKNKVLSWRSNSEKDIDEVLQTHTVFTN 60

Query: 259 VSKGQVAKKEDLIKIFAKEDQTEICKEILEKGELQVSDKERHSQIDSLFKDIATTVADKC 438
           VSKGQ AKK++L K F K D+TEICKEIL KGELQVS+KER S +D+    I  +VA  C
Sbjct: 61  VSKGQAAKKDELQKAFNKTDETEICKEILSKGELQVSEKERQSCLDTQLNSIVNSVAALC 120

Query: 439 VNPETKRPYPVSIIEKAIKDVHFSVNVNKSAKQQALDVIQILKNEIPIERAQMRVRILLT 618
           VNPET+RPYP SIIEK++KD HFSV +N++ KQ  L+ I+ILK+ +PIER++M++R+   
Sbjct: 121 VNPETRRPYPASIIEKSLKDAHFSVKMNRNTKQNTLEAIKILKDHMPIERSRMKLRVSFA 180

Query: 619 GKD-ARKTKDKVVKLATTVEDENWESGTANIVCLIDPGNFRSLDEMIRTETKGTGQFELL 795
           GK+   K K+ VVKLA  VE E W+  T ++  LIDPG +R +DE++R ETKG G  ELL
Sbjct: 181 GKEGGGKLKESVVKLANAVEHEEWDEATLHLTLLIDPGQYRVIDELVRNETKGKGLLELL 240

Query: 796 NLKEMVEGD 822
            LKE+VE +
Sbjct: 241 ELKEVVESE 249


>AY094666-1|AAM11019.1|  252|Drosophila melanogaster GH01786p
           protein.
          Length = 252

 Score =  345 bits (847), Expect = 6e-95
 Identities = 163/249 (65%), Positives = 198/249 (79%), Gaps = 1/249 (0%)
 Frame = +1

Query: 79  MSKIFTPTNQIRLTNVAIVRLKKGGKRFEIACYKNKVLSWRNKLEKDIDEVLQTHTVFTN 258
           MSKIFTPTNQIRLTNVAIVRLKKGGKRFEIACYKNKVLSWR+  EKDIDEVLQT+TVFTN
Sbjct: 1   MSKIFTPTNQIRLTNVAIVRLKKGGKRFEIACYKNKVLSWRSNSEKDIDEVLQTYTVFTN 60

Query: 259 VSKGQVAKKEDLIKIFAKEDQTEICKEILEKGELQVSDKERHSQIDSLFKDIATTVADKC 438
           VSKGQ AKK++L K F K D+TEICKEIL KGELQVS+KER S +D+    I  +VA  C
Sbjct: 61  VSKGQAAKKDELQKAFNKTDETEICKEILSKGELQVSEKERQSCLDTQLNSIVNSVAALC 120

Query: 439 VNPETKRPYPVSIIEKAIKDVHFSVNVNKSAKQQALDVIQILKNEIPIERAQMRVRILLT 618
           VNPET+RPYP SIIEK++KD HFSV +N++ KQ  L+ I+ILK+ +PIER++M++R+   
Sbjct: 121 VNPETRRPYPASIIEKSLKDAHFSVKMNRNTKQNTLEAIKILKDHMPIERSRMKLRVSFA 180

Query: 619 GKD-ARKTKDKVVKLATTVEDENWESGTANIVCLIDPGNFRSLDEMIRTETKGTGQFELL 795
           GK+   K K+ VVKLA  VE E W+  T ++  LIDPG +R +DE++R ETKG G  ELL
Sbjct: 181 GKEGGGKLKESVVKLANAVEHEEWDEATLHLTLLIDPGQYRVIDELVRNETKGKGLLELL 240

Query: 796 NLKEMVEGD 822
            LKE+VE +
Sbjct: 241 ELKEVVESE 249


>AY058795-1|AAL14024.1| 1412|Drosophila melanogaster SD10676p protein.
          Length = 1412

 Score = 30.7 bits (66), Expect = 2.5
 Identities = 30/109 (27%), Positives = 49/109 (44%), Gaps = 9/109 (8%)
 Frame = +1

Query: 97   PTNQIR--LTNVAIVR--LKKGGKRFEIACYKNKVLSWRNKL-----EKDIDEVLQTHTV 249
            PTN +   L  V +V+  + K  + FE  C K K   W+N+L     +K+    LQ  T 
Sbjct: 823  PTNVLLGPLIKVHLVKDDIPKAIEAFEEICQKYKSTPWKNELACRLIQKEDAANLQKLTD 882

Query: 250  FTNVSKGQVAKKEDLIKIFAKEDQTEICKEILEKGELQVSDKERHSQID 396
             +    G+V    DL+  F +  +    ++ILE   L+   +  +S  D
Sbjct: 883  LSTGIHGEVNSLYDLVFSFVECGRVRQARKILETPGLRTRPQRINSACD 931


>AF327844-1|AAK50882.1| 1412|Drosophila melanogaster bicoid mRNA
            stability factor protein.
          Length = 1412

 Score = 30.7 bits (66), Expect = 2.5
 Identities = 30/109 (27%), Positives = 49/109 (44%), Gaps = 9/109 (8%)
 Frame = +1

Query: 97   PTNQIR--LTNVAIVR--LKKGGKRFEIACYKNKVLSWRNKL-----EKDIDEVLQTHTV 249
            PTN +   L  V +V+  + K  + FE  C K K   W+N+L     +K+    LQ  T 
Sbjct: 823  PTNVLLGPLIKVHLVKDDIPKAIEAFEEICQKYKSTPWKNELACRLIQKEDAANLQKLTD 882

Query: 250  FTNVSKGQVAKKEDLIKIFAKEDQTEICKEILEKGELQVSDKERHSQID 396
             +    G+V    DL+  F +  +    ++ILE   L+   +  +S  D
Sbjct: 883  LSTGIHGEVNSLYDLVFSFVECGRVRQARKILETPGLRTRPQRINSACD 931


>AE014134-2933|AAF53668.2| 1412|Drosophila melanogaster CG10302-PA
            protein.
          Length = 1412

 Score = 30.7 bits (66), Expect = 2.5
 Identities = 30/109 (27%), Positives = 49/109 (44%), Gaps = 9/109 (8%)
 Frame = +1

Query: 97   PTNQIR--LTNVAIVR--LKKGGKRFEIACYKNKVLSWRNKL-----EKDIDEVLQTHTV 249
            PTN +   L  V +V+  + K  + FE  C K K   W+N+L     +K+    LQ  T 
Sbjct: 823  PTNVLLGPLIKVHLVKDDIPKAIEAFEEICQKYKSTPWKNELACRLIQKEDAANLQKLTD 882

Query: 250  FTNVSKGQVAKKEDLIKIFAKEDQTEICKEILEKGELQVSDKERHSQID 396
             +    G+V    DL+  F +  +    ++ILE   L+   +  +S  D
Sbjct: 883  LSTGIHGEVNSLYDLVFSFVECGRVRQARKILETPGLRTRPQRINSACD 931


>AY089304-1|AAL90042.1|  240|Drosophila melanogaster AT10515p
           protein.
          Length = 240

 Score = 29.9 bits (64), Expect = 4.4
 Identities = 29/124 (23%), Positives = 58/124 (46%), Gaps = 4/124 (3%)
 Frame = +1

Query: 175 YKNKVLSWRNKLEKDIDEVLQTHTVFTNVSKGQVAKKEDLI--KIFAKEDQTEICKEILE 348
           + N  + +   L ++IDE+     +F N ++  + KKE  +  ++F K D+  + ++ LE
Sbjct: 36  FNNPPIFFERHLAQEIDEMASFCRIFKNEARIVLVKKEKGLWPEMFQKLDKEALMQKRLE 95

Query: 349 KGELQVS-DKERHSQIDSLFKDIATTVADKCVNPET-KRPYPVSIIEKAIKDVHFSVNVN 522
             +L V  +K+R  +    + +       K +  ET  R       E ++++    V+V 
Sbjct: 96  IADLIVERNKKRDEKALERYDNKRRAEIQKEIQRETDMRERVKQFQENSVREA-LVVDVR 154

Query: 523 KSAK 534
           K AK
Sbjct: 155 KEAK 158


>AE014134-2034|AAF53073.1|  240|Drosophila melanogaster CG14921-PA
           protein.
          Length = 240

 Score = 29.9 bits (64), Expect = 4.4
 Identities = 29/124 (23%), Positives = 58/124 (46%), Gaps = 4/124 (3%)
 Frame = +1

Query: 175 YKNKVLSWRNKLEKDIDEVLQTHTVFTNVSKGQVAKKEDLI--KIFAKEDQTEICKEILE 348
           + N  + +   L ++IDE+     +F N ++  + KKE  +  ++F K D+  + ++ LE
Sbjct: 36  FNNPPIFFERHLAQEIDEMASFCRIFKNEARIVLVKKEKGLWPEMFQKLDKEALMQKRLE 95

Query: 349 KGELQVS-DKERHSQIDSLFKDIATTVADKCVNPET-KRPYPVSIIEKAIKDVHFSVNVN 522
             +L V  +K+R  +    + +       K +  ET  R       E ++++    V+V 
Sbjct: 96  IADLIVERNKKRDEKALERYDNKRRAEIQKEIQRETDMRERVKQFQENSVREA-LVVDVR 154

Query: 523 KSAK 534
           K AK
Sbjct: 155 KEAK 158


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,772,301
Number of Sequences: 53049
Number of extensions: 576296
Number of successful extensions: 1523
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1449
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1519
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3921660132
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)