Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P30_F_B13
         (597 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    23   2.0  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    21   6.0  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -2

Query: 125 TMHTTFITALFVFTILFXRQRIHLIF 48
           T+H  F+  ++ F   F    IHL+F
Sbjct: 203 TLHLLFLPCIYYFYSAFIIFTIHLLF 228



 Score = 21.8 bits (44), Expect = 4.5
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = -2

Query: 131 LLTMHTTFITALFVFTILFXRQRIHLIF 48
           + T+H  F+  ++ F   F    +HL+F
Sbjct: 155 IFTVHLLFLLCIYHFFCAFIIFTMHLLF 182


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = -2

Query: 275 PNSDGFVCDTLAASGYFSCFVAFSQAYCDF 186
           P  +G VC T+ A    +C   F    C+F
Sbjct: 346 PCQNGGVCTTIHAGHKCTCPEGFYGKNCEF 375


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,925
Number of Sequences: 336
Number of extensions: 2154
Number of successful extensions: 5
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15039504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)