Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P30_F_B13
         (597 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35451| Best HMM Match : Ribosomal_L36e (HMM E-Value=0)             122   3e-28
SB_19393| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_6230| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.2  
SB_13913| Best HMM Match : WH2 (HMM E-Value=8.8e-05)                   29   2.9  
SB_45611| Best HMM Match : p450 (HMM E-Value=0)                        28   5.0  
SB_51311| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_27155| Best HMM Match : Dynein_heavy (HMM E-Value=1.1e-09)          27   8.7  
SB_26477| Best HMM Match : GST_C (HMM E-Value=0.97)                    27   8.7  
SB_22067| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  
SB_14664| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  

>SB_35451| Best HMM Match : Ribosomal_L36e (HMM E-Value=0)
          Length = 100

 Score =  122 bits (293), Expect = 3e-28
 Identities = 62/103 (60%), Positives = 75/103 (72%)
 Frame = +3

Query: 189 IAVGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKR 368
           +AVGL+KGHK TK             + +P+R KG   K  KFVRD+VREVVG A YEKR
Sbjct: 1   MAVGLQKGHKVTK----------NVTKPKPSRRKGASNKRVKFVRDVVREVVGFAPYEKR 50

Query: 369 AMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVLAQMRK 497
            MELL++ KDKRALKF K+RLGTH+R KRKREE+++VLA MRK
Sbjct: 51  VMELLRIGKDKRALKFCKKRLGTHVRGKRKREEITSVLAAMRK 93


>SB_19393| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1660

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 33/107 (30%), Positives = 49/107 (45%), Gaps = 12/107 (11%)
 Frame = +3

Query: 195  VGLRKGHKTT-----KISAGRKGITDKAIRIRPARLKGLQ----TKHS---KFVRDLVRE 338
            V  RKGHK T     +   G+KGI  K  R+  +R    Q     KHS   K +R  +RE
Sbjct: 1109 VSTRKGHKRTENYNDRKRDGKKGIDGKRERLSSSRSDDFQQSKMIKHSHLEKSLRQAMRE 1168

Query: 339  VVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNV 479
             + H+       E  KV K K+ ++F K + G  ++   + E+   V
Sbjct: 1169 -LEHSSENSSEEEKRKVRK-KKLVEF-KNKHGLDVKKMDESEKRKKV 1212


>SB_6230| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 191

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +3

Query: 288 KGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDK 401
           +GL+    K  + ++ E  GHA Y+K    L KVS+++
Sbjct: 32  RGLRKVSRKHAQRILDETAGHASYKKEHRGLRKVSREQ 69



 Score = 29.5 bits (63), Expect = 2.2
 Identities = 20/61 (32%), Positives = 29/61 (47%)
 Frame = +3

Query: 288 KGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREE 467
           +GL+    K  R ++ E  GH  Y+K    L KVS+ K A + L    G H   K++   
Sbjct: 88  RGLRKVSRKHARRILDETAGHNTYKKEHRGLRKVSR-KHAQRILDGTAG-HCSYKKEHRG 145

Query: 468 L 470
           L
Sbjct: 146 L 146



 Score = 28.7 bits (61), Expect = 3.8
 Identities = 17/58 (29%), Positives = 27/58 (46%)
 Frame = +3

Query: 288 KGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKR 461
           +GL+    +  + ++ E  GH  Y+K    L KVS+ K A + L    G +   K  R
Sbjct: 60  RGLRKVSREQAQRIIDETAGHGSYKKEYRGLRKVSR-KHARRILDETAGHNTYKKEHR 116



 Score = 27.5 bits (58), Expect = 8.7
 Identities = 17/51 (33%), Positives = 24/51 (47%)
 Frame = +3

Query: 327 LVREVVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNV 479
           ++ E  GH  Y+K    L KVS+ K A + L    G H   K++   L  V
Sbjct: 17  ILNETAGHGSYKKEHRGLRKVSR-KHAQRILDETAG-HASYKKEHRGLRKV 65


>SB_13913| Best HMM Match : WH2 (HMM E-Value=8.8e-05)
          Length = 493

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 30/97 (30%), Positives = 49/97 (50%), Gaps = 4/97 (4%)
 Frame = +3

Query: 174 APRFEIAVGLRKGHKTTKISAGRKGITD---KAIRIRPARLKGLQTKHSKFVRDLVREVV 344
           AP+ E  V   K  K  K+S  ++ +     +AI    A LK  + K +  +R++++   
Sbjct: 269 APQNEEKVETPKSSKKEKLSELKRRLATPMREAIEAGIA-LKQTKKKLATPLREVIKSKP 327

Query: 345 GHAQYEKR-AMELLKVSKDKRALKFLKRRLGTHIRAK 452
              + +K+ A  L K  + K ALK  K+RL T IRA+
Sbjct: 328 KLKETKKKLATPLRKEIQSKPALKETKKRLATPIRAE 364


>SB_45611| Best HMM Match : p450 (HMM E-Value=0)
          Length = 847

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 16/29 (55%), Positives = 18/29 (62%)
 Frame = +3

Query: 390 SKDKRALKFLKRRLGTHIRAKRKREELSN 476
           +K  RALKFLK RL   +R KR  E L N
Sbjct: 59  NKSPRALKFLKTRL-QDLRKKRDSETLRN 86


>SB_51311| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 151

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -1

Query: 165 NNKTPNVNFKITSHNAHYFYNSAFCFHYSIXKA 67
           +N T +  F  ++H  HY + S+  FHY+  KA
Sbjct: 61  SNHTFHYTFT-SNHTFHYTFTSSHTFHYAFTKA 92


>SB_27155| Best HMM Match : Dynein_heavy (HMM E-Value=1.1e-09)
          Length = 1248

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = +3

Query: 273 RPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKR 404
           RP +L+ ++   + +VR L   + G  +Y +    L++ SKD R
Sbjct: 625 RPNKLQVIKLSDANYVRTLENSIQGGIEYLRLGDHLVEFSKDFR 668


>SB_26477| Best HMM Match : GST_C (HMM E-Value=0.97)
          Length = 971

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = -1

Query: 432 PIVASRTSEHACLLTP*VTP*PSSHIERVRQLRVLNHGQTW 310
           P     +S  A L+     P PS ++   R+ R  NHG+TW
Sbjct: 772 PTERDYSSALAALMRKAKQPKPSPNLVHTRRERPRNHGRTW 812


>SB_22067| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 705

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
 Frame = -2

Query: 302 RLKTL*SSWPNS----DGFVCDTLAASGYFSCFVAFSQAYCDFKTRSHA 168
           RLK++  SW N+     G  CD   A+G F   V FS  +   K R H+
Sbjct: 440 RLKSMRWSWENARTSKGGQSCDDPDATGDFEDEVTFSDPHLQKKFRRHS 488


>SB_14664| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 61

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/45 (26%), Positives = 27/45 (60%)
 Frame = +3

Query: 333 REVVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREE 467
           RE+    + + +  E++K+ K K++ K +K++     + K+K+EE
Sbjct: 3   REINQKDKKQIKKEEIIKIKKKKKSKKKIKKKKKKKKKKKKKKEE 47


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,693,068
Number of Sequences: 59808
Number of extensions: 301043
Number of successful extensions: 792
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 700
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 790
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)