Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P30_F_B12
(604 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_34826| Best HMM Match : Extensin_2 (HMM E-Value=0.29) 33 0.24
SB_10210| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.54
SB_39808| Best HMM Match : EGF_CA (HMM E-Value=6.3e-35) 31 0.95
SB_6033| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=1.6e-37) 30 1.7
SB_42335| Best HMM Match : Hint (HMM E-Value=1.4013e-45) 29 3.8
SB_57821| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.1
SB_44859| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_2284| Best HMM Match : Hormone_5 (HMM E-Value=0.46) 28 6.7
SB_30485| Best HMM Match : fn3 (HMM E-Value=0.0045) 28 6.7
SB_47780| Best HMM Match : CBM_3 (HMM E-Value=1.8) 27 8.8
SB_27758| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.8
>SB_34826| Best HMM Match : Extensin_2 (HMM E-Value=0.29)
Length = 299
Score = 32.7 bits (71), Expect = 0.24
Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 9/65 (13%)
Frame = +3
Query: 270 QGSSGYTAPDGTPIQITYTAD--ANGY-----QPSGAHL--PTTPAPLPIPDYIARAIEY 422
Q S G+T PIQ +YTA + GY P+ AH P T P+ P Y A Y
Sbjct: 14 QHSQGFTTVQNPPIQTSYTAPQASTGYAVQGTAPTAAHYGPPQTQRPVVQPAYSAGTTAY 73
Query: 423 IRTHP 437
++ P
Sbjct: 74 AQSAP 78
>SB_10210| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 793
Score = 31.5 bits (68), Expect = 0.54
Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 7/70 (10%)
Frame = +3
Query: 216 QEQGVLVNEGREDASIAVQGSSGYTAPDGTPIQITYTAD-----ANGYQPSGAHLPTTPA 380
+ +G + + S +V GS G +P GTP+ A A ++ S A LP T A
Sbjct: 492 EREGSIHSSSGHSVSGSVTGSIGERSPVGTPVASPVVAPVMSPLAAAHRASSASLPVTTA 551
Query: 381 --PLPIPDYI 404
P P P Y+
Sbjct: 552 VSPAPEPTYL 561
>SB_39808| Best HMM Match : EGF_CA (HMM E-Value=6.3e-35)
Length = 850
Score = 30.7 bits (66), Expect = 0.95
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = -3
Query: 554 YCETRHINDRQCYGLRCFNNS 492
+C+ +N R CYG+RC+N +
Sbjct: 438 HCDLAMMNGRTCYGVRCYNKT 458
>SB_6033| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=1.6e-37)
Length = 1052
Score = 29.9 bits (64), Expect = 1.7
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Frame = +3
Query: 258 SIAVQGSSGYTAPDGTPIQITYTADANGYQP-SGAHLPTTPAPLPI-PDYIARAIEYIRT 431
++A S +P TP +YT + Y P S ++ PT+P+ P P Y + + Y
Sbjct: 654 TLAASPSYSPASPSYTPASPSYTPTSPSYSPASPSYSPTSPSYSPASPSYTSASPSYSPA 713
Query: 432 HP 437
P
Sbjct: 714 SP 715
>SB_42335| Best HMM Match : Hint (HMM E-Value=1.4013e-45)
Length = 825
Score = 28.7 bits (61), Expect = 3.8
Identities = 17/41 (41%), Positives = 20/41 (48%)
Frame = +3
Query: 273 GSSGYTAPDGTPIQITYTADANGYQPSGAHLPTTPAPLPIP 395
G+ AP GT I+I T + G QP H P PLP P
Sbjct: 92 GAGKPVAPPGTTIRIAVTVNRTG-QPE-IHPEVHPGPLPPP 130
>SB_57821| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 941
Score = 28.3 bits (60), Expect = 5.1
Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Frame = +3
Query: 285 YTAPDGTPIQITYTA--DANGYQPSGAHLPTTPAPLPIPD 398
Y +P T Y A D GY PS +P++P P P D
Sbjct: 561 YISPTATAGDRRYPARPDPMGYSPSEMGVPSSPLPRPASD 600
>SB_44859| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 650
Score = 27.9 bits (59), Expect = 6.7
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = -3
Query: 248 TALVYEHSLFLATDSVAGLILVLVFVRENVSILRHNL 138
T L+ H+L + ++ L L+ R N+ ILRHNL
Sbjct: 345 TLLILRHNLLILRHNLLILRHHLLIFRHNLIILRHNL 381
>SB_2284| Best HMM Match : Hormone_5 (HMM E-Value=0.46)
Length = 1266
Score = 27.9 bits (59), Expect = 6.7
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -2
Query: 198 WSDIGTGICPGKRQHLATQFGHQ 130
W+ GT CPG++ L Q GH+
Sbjct: 857 WNAFGTHTCPGEQLCLVGQLGHR 879
>SB_30485| Best HMM Match : fn3 (HMM E-Value=0.0045)
Length = 514
Score = 27.9 bits (59), Expect = 6.7
Identities = 19/68 (27%), Positives = 28/68 (41%)
Frame = +3
Query: 234 VNEGREDASIAVQGSSGYTAPDGTPIQITYTADANGYQPSGAHLPTTPAPLPIPDYIARA 413
++ G A+ +G+ T P G P Q Y P G H TTP P +Y +
Sbjct: 425 LHPGDTHATTTPRGTHATTTPRGVPTQQLY--------PGGTHATTTPRRYPRNNY-TQG 475
Query: 414 IEYIRTHP 437
+ + HP
Sbjct: 476 VPTQQLHP 483
Score = 27.5 bits (58), Expect = 8.8
Identities = 18/57 (31%), Positives = 22/57 (38%), Gaps = 2/57 (3%)
Frame = +3
Query: 273 GSSGYTAPDGTPIQITYTADANGYQ--PSGAHLPTTPAPLPIPDYIARAIEYIRTHP 437
G+ T P P + YT Q P G H TTP P DY + + HP
Sbjct: 457 GTHATTTPRRYP-RNNYTQGVPTQQLHPGGTHATTTPRRYPRNDYTQEGVPTQQLHP 512
>SB_47780| Best HMM Match : CBM_3 (HMM E-Value=1.8)
Length = 597
Score = 27.5 bits (58), Expect = 8.8
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -1
Query: 259 DASSRPSFTSTPCSWPLIPLLV*YW 185
+ S +F+STP WP++ V YW
Sbjct: 477 ELSGEHTFSSTPSQWPIMKRGVAYW 501
>SB_27758| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1926
Score = 27.5 bits (58), Expect = 8.8
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
Frame = +3
Query: 123 GEADAQIVSQD----ADVFPDKYQYQYQTSNGISGQE 221
G+ +AQ + DV P+ Y Y+T G+ GQE
Sbjct: 1144 GQGEAQYADDEWDYVEDVVPEAETYGYETYQGVEGQE 1180
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,939,028
Number of Sequences: 59808
Number of extensions: 380403
Number of successful extensions: 1006
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 903
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 999
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1463691625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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