Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P30_F_B10
         (769 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20)                     28   9.5  
SB_29769| Best HMM Match : TNFR_c6 (HMM E-Value=3.60001e-40)           28   9.5  
SB_1021| Best HMM Match : Sec2p (HMM E-Value=1.9)                      28   9.5  

>SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20)
          Length = 3489

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -2

Query: 495  KKREIKSVKVLVVGRLVSPRG*VPPP 418
            K  E++ V  LV+GR  + +G VPPP
Sbjct: 2931 KAGELQEVPGLVIGRTTAQQGPVPPP 2956


>SB_29769| Best HMM Match : TNFR_c6 (HMM E-Value=3.60001e-40)
          Length = 768

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = +3

Query: 279 LKTTCV*KNVFDKICDMCPFRNFIFSYN 362
           L T C   N  D +CD CP   F+   N
Sbjct: 89  LVTPCGRNNTTDSVCDACPINTFMSHAN 116


>SB_1021| Best HMM Match : Sec2p (HMM E-Value=1.9)
          Length = 451

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = -1

Query: 625 PAGLRDRPIPVGKTT*HSPDTPSRSIHSQSFSK 527
           P G+   P+P+G  T   P  P    HS SF K
Sbjct: 406 PPGITTEPVPLGDETASQPQKPRNDKHS-SFDK 437


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,626,306
Number of Sequences: 59808
Number of extensions: 441627
Number of successful extensions: 834
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 762
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 834
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2083999566
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)