Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P30_F_B10
         (769 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090814-2|BAC57904.1| 1049|Anopheles gambiae reverse transcript...    25   2.6  
AF283269-1|AAG15374.1|  114|Anopheles gambiae ribosomal protein ...    24   4.5  

>AB090814-2|BAC57904.1| 1049|Anopheles gambiae reverse transcriptase
            protein.
          Length = 1049

 Score = 25.0 bits (52), Expect = 2.6
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -3

Query: 338  KRAHVAYFVKYVFSYTCSFEAYLHPFYNNSTN 243
            K   V YFV  V S    F +YLH F   S++
Sbjct: 938  KHGDVDYFVTQVLSGHGCFRSYLHRFNRASSS 969


>AF283269-1|AAG15374.1|  114|Anopheles gambiae ribosomal protein S26
           protein.
          Length = 114

 Score = 24.2 bits (50), Expect = 4.5
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +3

Query: 348 IFSYNGCPALQTKTHYCFTAEIGGVVVPTRA 440
           ++S    P L  K HYC +  I   VV  R+
Sbjct: 57  VYSSYVLPKLYAKLHYCVSCAIHSKVVRNRS 87


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 773,717
Number of Sequences: 2352
Number of extensions: 16915
Number of successful extensions: 20
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 79834176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)