Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P30_F_B07
         (844 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    31   0.15 
SPBC3B9.04 |||mitochondrial methyltransferase |Schizosaccharomyc...    27   3.3  
SPAC19A8.12 |dcp2||mRNA decapping complex subunit Dcp2|Schizosac...    27   4.4  
SPBC14C8.03 |fma2||methionine aminopeptidase Fma2 |Schizosacchar...    27   4.4  
SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyce...    26   7.7  

>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 31.5 bits (68), Expect = 0.15
 Identities = 17/56 (30%), Positives = 20/56 (35%)
 Frame = +2

Query: 128 PPGGGHTNIFDSEPEPPRTGRRAVPPSATSTFSHGQGDEPKATNGTSVATNGQSTP 295
           PP G  T        P  T   + PP   ST S G    P  +  TS  T+    P
Sbjct: 292 PPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLPSTSTSCTTSTSIPP 347



 Score = 31.5 bits (68), Expect = 0.15
 Identities = 17/56 (30%), Positives = 20/56 (35%)
 Frame = +2

Query: 128 PPGGGHTNIFDSEPEPPRTGRRAVPPSATSTFSHGQGDEPKATNGTSVATNGQSTP 295
           PP G  T        P  T   + PP   ST S G    P  +  TS  T+    P
Sbjct: 346 PPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLLSTSTSCTTSTSIPP 401


>SPBC3B9.04 |||mitochondrial methyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 248

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +2

Query: 464 PHPLAVSLYNQIFDFHLTHIMSQICIEAKFFLRY 565
           P+  ++S+YNQI D +   I  +      +FLRY
Sbjct: 45  PNSNSISIYNQIADKYSRKITREEIFSGIYFLRY 78


>SPAC19A8.12 |dcp2||mRNA decapping complex subunit
           Dcp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 741

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +2

Query: 200 PPSATSTFSHGQGDEPKATNGTSVA-TNGQST 292
           PP++TS  S+G G  P+   G+S    NG  T
Sbjct: 420 PPTSTSVSSYGLGKTPQPAYGSSSPYVNGHQT 451


>SPBC14C8.03 |fma2||methionine aminopeptidase Fma2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = +1

Query: 400 RSPQARQGPPRRVLLGLVVNRTAPVG--CESVQSNL 501
           ++PQ +  PP   L  + VN+  PVG  C+  + NL
Sbjct: 60  KTPQEQTNPPTVGLSKIFVNKKYPVGEVCDYAEDNL 95


>SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 855

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 19/61 (31%), Positives = 24/61 (39%)
 Frame = -1

Query: 790 NLKRIALGENKIGRRAARVTEIFKLSWLNYERIQPILASLADNTTLIISKGKIGNTHCFE 611
           NLK     E  I   A    +I  LSW    R   +L+S  D T  +    +     CFE
Sbjct: 291 NLKAPVFSEAPIREYAGHTADILDLSW---SRNNFLLSSSMDKTARLWHPVRKDCLCCFE 347

Query: 610 H 608
           H
Sbjct: 348 H 348


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,095,079
Number of Sequences: 5004
Number of extensions: 57515
Number of successful extensions: 167
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)