Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P30_F_B07
         (844 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL031629-6|CAA20980.2|  948|Caenorhabditis elegans Hypothetical ...    35   0.083
U13019-16|AAK84569.1|  311|Caenorhabditis elegans Serpentine rec...    28   7.2  
AC103567-8|AAL35729.1|  305|Caenorhabditis elegans Hypothetical ...    28   7.2  

>AL031629-6|CAA20980.2|  948|Caenorhabditis elegans Hypothetical
           protein Y106G6D.7 protein.
          Length = 948

 Score = 34.7 bits (76), Expect = 0.083
 Identities = 23/80 (28%), Positives = 36/80 (45%)
 Frame = +2

Query: 41  SDK*KNKMTSTPFNVGLNDGARLSSRVLRPPGGGHTNIFDSEPEPPRTGRRAVPPSATST 220
           S+K KN   +  FN   N G + +     P     T++ ++   PP+TGR+ + P+  + 
Sbjct: 286 SNKYKNNYKAPEFNNDFNGGNKFNQ--FPPRNAQSTDLSENRAAPPQTGRKTLMPTPQAP 343

Query: 221 FSHGQGDEPKATNGTSVATN 280
           F   Q      TNG S   N
Sbjct: 344 F---QNAPAPFTNGPSDDVN 360


>U13019-16|AAK84569.1|  311|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 6 protein.
          Length = 311

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
 Frame = +2

Query: 473 LAVSLYNQIFD---FHLTHIMSQICIEAKFFLR 562
           LA+SL N  FD   + LT  + QIC    FFLR
Sbjct: 66  LALSLLNLFFDIFYYRLTLFVPQICESFSFFLR 98


>AC103567-8|AAL35729.1|  305|Caenorhabditis elegans Hypothetical
           protein Y51F10.2 protein.
          Length = 305

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 15/53 (28%), Positives = 25/53 (47%)
 Frame = -2

Query: 594 CRILKGQPEAYLKKNLASIHICDIM*VK*KSKI*LYRLTANGCGSVYHKPEEN 436
           CR +   P  Y++ N   I + D M  + ++   +  L   GC  VYH+ + N
Sbjct: 75  CRAVTQTPRNYIRSNYQLIELMDSM--RGEADHNISFLACVGCNGVYHEKDTN 125


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,847,451
Number of Sequences: 27780
Number of extensions: 355474
Number of successful extensions: 1051
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 939
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1051
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2087513582
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)