Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P30_F_B06
         (854 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription te...    27   4.5  
SPBC428.11 |||homocysteine synthase |Schizosaccharomyces pombe|c...    27   4.5  
SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|ch...    26   7.8  
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar...    26   7.8  
SPBC36.12c |git7||SGT1-like protein Git7|Schizosaccharomyces pom...    26   7.8  

>SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription
           termination factor Reb1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 504

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -3

Query: 327 IEHHVRQGFVPFDKRC 280
           I HHVR+ + PF+ RC
Sbjct: 299 IYHHVRRAYNPFEDRC 314


>SPBC428.11 |||homocysteine synthase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 429

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 19/63 (30%), Positives = 28/63 (44%)
 Frame = +1

Query: 85  YCDVDFSERPRNFSIELLYHTQTQTDGHVVISPFGIWTLMTGIALGASGNSYRQLSRAFI 264
           Y  + F+E   N +      TQT  D     +PFG++ L+ G+    S    R +  AF 
Sbjct: 248 YHGMVFTETFGNLAYAFACRTQTLRDVGGNANPFGVFLLLQGLET-LSLRMERHVQNAFA 306

Query: 265 LPK 273
           L K
Sbjct: 307 LAK 309


>SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 979

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -2

Query: 544 GSRQSAERSRRVPRIFRCRCWLFE 473
           GS    E    +  +FRCRC +F+
Sbjct: 71  GSNDDEEDDLDITTLFRCRCMIFD 94


>SPAC26A3.09c |rga2||GTPase activating protein
            Rga2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1275

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 17/62 (27%), Positives = 32/62 (51%)
 Frame = +3

Query: 624  TGALLQ*RPTGNRQREHDVPERTVPVLKPKEA*GLRTGTSLRHRRKVLDAGHTPAPENED 803
            TG++L+   T   +R  D PE+ VPV++ + +      T      ++L   H+   +NE+
Sbjct: 950  TGSVLEIADT---RRNQDAPEKHVPVIEIQSSRPSLEKTDQSTPVELLIDSHSQNSQNEE 1006

Query: 804  RR 809
            +R
Sbjct: 1007 KR 1008


>SPBC36.12c |git7||SGT1-like protein Git7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -1

Query: 548 SWKSSERRTFETRPP 504
           +WK  + +TFET+PP
Sbjct: 357 NWKDVKSKTFETKPP 371


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,591,982
Number of Sequences: 5004
Number of extensions: 78931
Number of successful extensions: 186
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)