Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P30_F_B06
(854 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_1152 + 9170628-9171899 58 7e-09
04_04_0619 + 26652923-26653267,26653440-26654273 58 1e-08
11_01_0771 + 6453130-6454488 47 2e-05
11_01_0767 + 6438648-6438809,6439146-6440000 47 2e-05
03_05_0293 + 22849103-22849513,22849670-22849756,22850156-228502... 44 2e-04
03_05_0296 + 22866280-22866282,22867178-22867444,22868363-22868869 40 0.003
02_04_0572 + 23972319-23973683 32 0.51
05_06_0044 - 25150322-25151260 31 0.89
03_05_0001 - 19386264-19386284,19386446-19386517,19386614-193873... 31 0.89
11_01_0532 + 4201374-4201401,4201475-4202652,4204316-4204670,420... 31 1.5
03_05_0294 + 22855503-22855946,22856346-22856399 30 2.7
08_01_1061 - 10804269-10804352,10804464-10804593,10804696-108047... 29 4.7
03_06_0135 + 31928838-31929698,31929783-31929932,31930795-319310... 29 4.7
02_03_0010 - 13914705-13915318,13915536-13915860,13915907-13916077 28 8.3
>01_01_1152 + 9170628-9171899
Length = 423
Score = 58.4 bits (135), Expect = 7e-09
Identities = 63/234 (26%), Positives = 105/234 (44%), Gaps = 19/234 (8%)
Frame = +1
Query: 172 VISPFGIWTLMTGIALGASGNSYRQLSRAFILPKNPATLIEGYKSLTDVVLDQTANGVSL 351
++SP + +A GA G + R+L P +L E ++S T ++ + + +
Sbjct: 62 IVSPLSFHAALALVADGARGETQRELLGFLGSP----SLAELHRSPTTRLVARLRHLPNT 117
Query: 352 VSRNFVFLDNDFTLLPAFRTTLQKDFGASIKVLDFS-DPNSARI-ANTYI-EKSGGRVSN 522
V++D L P F + A + DF+ P AR N ++ + + G + +
Sbjct: 118 SFACGVWVDRGRALTPEFADAAASRYAAVAEPADFATQPEQARERVNAFVSDATEGLIRD 177
Query: 523 VLRSDDFQESRLI-LTNVISFKGLWGLPFNKSDTELEPFYNEDRLVIGSVNMMYQKGQFP 699
VL + S ++ L N + FKG W LPF+ S T PF+ D G+V + + P
Sbjct: 178 VLPPNSVDSSTVVVLANAVHFKGTWSLPFHPSATFHAPFHLLDG---GAVRAPFMTTEIP 234
Query: 700 FS-NLKKLKAF-VLELPY-------GTDG----KYSMLVILP--HPRTKIADMY 816
F ++ F L+LPY G DG + ML++LP K+AD+Y
Sbjct: 235 FERHVAAFPGFTALKLPYKNVGGGGGGDGVPRAAFYMLLLLPDGDGALKLADLY 288
>04_04_0619 + 26652923-26653267,26653440-26654273
Length = 392
Score = 57.6 bits (133), Expect = 1e-08
Identities = 44/163 (26%), Positives = 76/163 (46%), Gaps = 4/163 (2%)
Frame = +1
Query: 172 VISPFGIWTLMTGIALGASGNSYRQLSRAFILPKNPATLIEGYKSLTDVVLDQTANGVSL 351
+ SP G+ + +A G G + RQL AF+ ++ I + + +L + L
Sbjct: 23 MFSPLGLRAGLALLATGTDGETLRQLL-AFLGSQH----IHQLNAASAGLLAEMRAWPQL 77
Query: 352 VSRNFVFLDNDFTLLPAFRTTLQKDFGASIKVLDFSDPNSARIA--NTYIEKS-GGRVSN 522
+F+D L P F++T GA + +DF + +A A N +I ++ GR++N
Sbjct: 78 SFAAGIFVDRSLRLRPEFQSTAAAAHGAFPRSVDFQNQANAAAAEVNRFISQATNGRLNN 137
Query: 523 VLRSDDFQES-RLILTNVISFKGLWGLPFNKSDTELEPFYNED 648
+ F S + +L N + FK WG F DT+ F+ +D
Sbjct: 138 TISPGTFGSSTKCVLANAMHFKATWGRKFESYDTQRRRFHRQD 180
>11_01_0771 + 6453130-6454488
Length = 452
Score = 47.2 bits (107), Expect = 2e-05
Identities = 19/34 (55%), Positives = 24/34 (70%)
Frame = +1
Query: 547 ESRLILTNVISFKGLWGLPFNKSDTELEPFYNED 648
E+ ++L N I FKG W PFN+SDTE +PFY D
Sbjct: 201 ETAVVLGNAIYFKGKWDRPFNESDTERKPFYRHD 234
>11_01_0767 + 6438648-6438809,6439146-6440000
Length = 338
Score = 46.8 bits (106), Expect = 2e-05
Identities = 46/160 (28%), Positives = 78/160 (48%), Gaps = 8/160 (5%)
Frame = +1
Query: 316 VVLDQTANGVSLVSRNF-VFLDNDFTLLPAFRTTLQKDFGASIKVLDFSD-PNSARIA-N 486
V+ DQ G VS +LD ++L PA+R + + + +DF + P AR N
Sbjct: 4 VLADQAPTGGPCVSFACGSWLDASYSLKPAYRDAIVGTYKGAASTVDFKNHPVEARKEIN 63
Query: 487 TYIEKSGGR-VSNVLRSDDFQ-ESRLILTNVISFKGLWGLPFNKSDTELEPFYNEDRLVI 660
++ ++ ++ V++ + ++R ++ N I FKG W PF+KSDT F RL
Sbjct: 64 AWVARATKNLITEVIKPESQSVDTRHVVGNAIYFKGEWLAPFDKSDTAEREF---RRLDG 120
Query: 661 GSVNMMY-QKGQFPFSNLKKLKAF-VLELPY-GTDGKYSM 771
SV + + Q+ + ++ F VL LPY T Y++
Sbjct: 121 SSVEVPFMQRPSGSYHHVACHDGFRVLRLPYKATSDTYNL 160
>03_05_0293 +
22849103-22849513,22849670-22849756,22850156-22850284,
22850507-22851262,22853474-22854250
Length = 719
Score = 44.0 bits (99), Expect = 2e-04
Identities = 34/108 (31%), Positives = 55/108 (50%), Gaps = 7/108 (6%)
Frame = +1
Query: 484 NTYIEK-SGGRVSNVLRSDDFQES-RLILTNVISFKGLWGLPFNKSDTELEPFYNEDRLV 657
N+++EK + G + +L + RL+L N + FKG W F+ S T+ F+ D
Sbjct: 218 NSWVEKVTSGLIKEILPPGSVDHTTRLVLGNALYFKGAWTEKFDASKTKDGEFHLLDGKS 277
Query: 658 IGSVNMMYQKGQF--PFSNLKKLKAFVLELPY---GTDGKYSMLVILP 786
+ + M K Q+ + NLK VL+LPY G ++SM ++LP
Sbjct: 278 VQAPFMSTSKKQYILSYDNLK-----VLKLPYQQGGDKRQFSMYILLP 320
>03_05_0296 + 22866280-22866282,22867178-22867444,22868363-22868869
Length = 258
Score = 39.5 bits (88), Expect = 0.003
Identities = 33/106 (31%), Positives = 55/106 (51%), Gaps = 5/106 (4%)
Frame = +1
Query: 484 NTYIEK-SGGRVSNVLRSDDFQES-RLILTNVISFKGLWGLPFNKSDTELEPFYNEDRLV 657
N+++++ + G + +L + RL+L N + FKG W F+ S T+ F D
Sbjct: 10 NSWVDRVTSGLIKEILPPGSVDHTTRLVLGNALYFKGAWTEKFDASKTKDGEFRLLDGKS 69
Query: 658 IGSVNMMYQKGQFPFSNLKKLKAFVLELPY--GTD-GKYSMLVILP 786
+ + M K Q+ S+ LK VL+LPY G D ++SM ++LP
Sbjct: 70 VLAPFMSTSKKQY-LSSYDSLK--VLKLPYQKGRDLRQFSMYILLP 112
>02_04_0572 + 23972319-23973683
Length = 454
Score = 32.3 bits (70), Expect = 0.51
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 4/33 (12%)
Frame = +2
Query: 356 AGTLSSWTTISPYCR----PSGRRSRRISVLRL 442
AG LSSW +P+CR GRR R++ L L
Sbjct: 47 AGVLSSWNKTTPFCRWNGVKCGRREHRVTALEL 79
>05_06_0044 - 25150322-25151260
Length = 312
Score = 31.5 bits (68), Expect = 0.89
Identities = 43/174 (24%), Positives = 70/174 (40%), Gaps = 20/174 (11%)
Frame = +1
Query: 367 VFLDNDFTLLPAFRTTLQKDFGASIKVLDFSDPNSARIANTYIEKSGGRVSNVLRS--DD 540
V++D L PAF T F A+++ A I + ++GG V ++L + DD
Sbjct: 3 VWVDASLRLNPAFADTAASVFKAAVRSAGNPAAARAEINEWFSSQTGGFVKDILSNSIDD 62
Query: 541 FQE----------SRLILTNVISFKGLWGLPFNKSDTELEPFY-NEDRLVIGSVNMMYQK 687
+ + + L N + F W PF TE F+ + D V V M
Sbjct: 63 DDDGSGGGGGAISASVFLANSLYFNAYWDHPFFPHLTEEGDFHVSPDHDV--RVPFMAGS 120
Query: 688 GQFPFSNLKKLKAF-VLELPY------GTDGKYSMLVILPHPRTKIADMYKNFA 828
Q F ++ F VL + Y G D ++M + LP R + ++ + A
Sbjct: 121 HQHAFMDVGCHPGFNVLRMMYRTGGAAGGDKMFAMYIYLPDDRDGLPELARKLA 174
>03_05_0001 -
19386264-19386284,19386446-19386517,19386614-19387357,
19387454-19388884,19388953-19389118,19392035-19392114,
19392393-19392462,19392550-19392761,19392837-19392890,
19393471-19393623,19393715-19393930,19394029-19394248,
19394332-19394399,19394510-19394643,19394755-19394854,
19394943-19395421,19395506-19395699,19396270-19396355,
19396364-19396444,19396842-19397023,19397305-19397346,
19398247-19398558,19399374-19399434,19399435-19399617,
19399744-19399863,19400380-19401051,19402597-19402668,
19402742-19402865,19403563-19403651,19405023-19405097
Length = 2170
Score = 31.5 bits (68), Expect = 0.89
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -2
Query: 817 CTCLRSSFSGAGV*PASSTFRRCRKEVP 734
C CL S SG G+ PA +F CR + P
Sbjct: 536 CPCLPESSSGCGILPAPPSFNPCRCDKP 563
>11_01_0532 +
4201374-4201401,4201475-4202652,4204316-4204670,
4204791-4204864,4206965-4207056,4207500-4207573,
4207680-4207822,4207889-4207909
Length = 654
Score = 30.7 bits (66), Expect = 1.5
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = -3
Query: 216 SDSRHQSPYPKRRDHNVPISLSL 148
SDSR Q P+P RDHN +S S+
Sbjct: 584 SDSRGQGPHPNFRDHNGGVSSSI 606
>03_05_0294 + 22855503-22855946,22856346-22856399
Length = 165
Score = 29.9 bits (64), Expect = 2.7
Identities = 23/101 (22%), Positives = 47/101 (46%), Gaps = 4/101 (3%)
Frame = +1
Query: 166 HVVISPFGIWTLMTGIALGASGNSYRQLSRAFILP-KNPATLIEGY-KSLTDVVLDQT-- 333
+V SP + ++ +A GA G + QL +P + A + + + + +VL +
Sbjct: 45 NVAFSPLSLHVALSLVAAGAGGATRDQLVSLLGVPGRGTAEGLHAFAEQVVQLVLADSSP 104
Query: 334 ANGVSLVSRNFVFLDNDFTLLPAFRTTLQKDFGASIKVLDF 456
A G + + VF+D+ +L+ +F+ + A +DF
Sbjct: 105 AGGPRVAFADGVFIDSSLSLMKSFKDVAVGKYKAETHSVDF 145
>08_01_1061 -
10804269-10804352,10804464-10804593,10804696-10804745,
10805154-10805216,10806235-10806375,10806541-10806925,
10807735-10808339
Length = 485
Score = 29.1 bits (62), Expect = 4.7
Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Frame = -1
Query: 443 LIEAPKSFWSVVLKAGNKVKSLSKKTKFRL-TRDTPFAV*SSTTSVRDLYPSI 288
++E S SV + G+ +K + ++TKFRL + D P+ S SV +P++
Sbjct: 319 VVEVGVSTSSVPITYGSAIKLMHERTKFRLHSHDVPYGSGSGQQSVTS-FPNV 370
>03_06_0135 +
31928838-31929698,31929783-31929932,31930795-31931065,
31931157-31931249,31931442-31931616,31931715-31931960,
31932100-31932294,31932604-31932802
Length = 729
Score = 29.1 bits (62), Expect = 4.7
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = +3
Query: 273 KSGNAYRRVQIPDGRGARSDRERSIPGQPELCLL 374
KSG+ Y DG G++ RERS P P CL+
Sbjct: 236 KSGHHYIPCVDFDGDGSQRHRERSCPRLPATCLV 269
>02_03_0010 - 13914705-13915318,13915536-13915860,13915907-13916077
Length = 369
Score = 28.3 bits (60), Expect = 8.3
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 7/45 (15%)
Frame = +3
Query: 249 EQSVYFAQKSGNAYR----RVQI---PDGRGARSDRERSIPGQPE 362
E+++Y K+ N YR RV+ P +G ++ R IPGQPE
Sbjct: 135 EEAIYMGNKNNNGYRLSGGRVRNQPRPYYQGVPANEFRRIPGQPE 179
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,789,397
Number of Sequences: 37544
Number of extensions: 535525
Number of successful extensions: 1464
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1461
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2385713652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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